Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6149 125 6e-24 seq5367 89.7 4e-13 >seq6149 Length=26765 Score = 125 bits (138), Expect = 6e-24 Identities = 325/491 (66%), Gaps = 6/491 (1%) Strand=Plus/Minus Query 132917 GCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGA 132976 ||||| || ||||||||||| || || |||| ||| ||||| ||||| ||| || Sbjct 22571 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGT 22512 Query 132977 CACC--ACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATG 133034 || | || || || || ||||| | | |||| ||| || ||||| ||| Sbjct 22511 CAACTTACTGATC--GTCGGGTCGGCAATGTGAATGTTCAACGACTGGCTCTGGCAAATG 22454 Query 133035 AAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTC 133094 | | ||||||| || | || || | | ||| ||||| ||||| | ||| Sbjct 22453 TAGGCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATTTCCCACACTGTC 22394 Query 133095 TTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCG 133154 ||| | | |||||| || | || || | | ||||||||||| || || Sbjct 22393 TTGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCA 22334 Query 133155 GCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACG 133214 |||| |||| |||||||| || || || | || | || ||||| ||| |||| | | Sbjct 22333 GCCAGGATCTGGTTGCGCACCTCAGGCGTCCAGATTCCCAGCTCGATCAGCTCTTTCATG 22274 Query 133215 AGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGA 133273 || |||| ||| || | | |||| ||| || || || ||||| | | || | ||||| Sbjct 22273 AGGTACTTGTTCACGATCGTGAA-CTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGA 22215 Query 133274 CGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCAT 133333 ||| |||| |||| || ||||||||||| | ||||| ||||||| ||| |||||||| Sbjct 22214 CGTATACGGCTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCAT 22155 Query 133334 GTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTT 133393 ||||| | | ||||| | || ||||| |||| | | ||| || | | | Sbjct 22154 CGGAGCCACGAGGAGCGAGTTGCGTATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGT 22095 Query 133394 CCAGTCCCACA 133404 ||||||||||| Sbjct 22094 CCAGTCCCACA 22084 >seq5367 Length=20193 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| ||||||||||| || |||||| |||| Sbjct 7867 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 7926 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || ||||| |||||||| ||||| || || || | || Sbjct 7927 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 7986 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||| | ||| || || | || | || || || ||||| || || ||||| Sbjct 7987 ATGCTGTCGGATGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAAG 8046 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 8047 ATCTGCATG 8055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433782608022988