Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq9025 154 1e-32 seq6965 132 3e-26 seq5367 122 6e-23 seq8636 100 2e-16 >seq9025 Length=46235 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||||||||| || || ||||| |||||||||||| | Sbjct 13023 CCACCGCGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 13082 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| || |||| || | ||||||||| |||||||| || ||||||||||| | |||| Sbjct 13083 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 13142 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || || ||||| | || | | ||||| || | || || || Sbjct 13143 -ATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCAC 13201 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| ||||| || ||||| || | ||| ||||| |||||||||||| Sbjct 13202 GTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATC 13250 Score = 147 bits (162), Expect = 1e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | |||||||||||||| || || ||||| |||||||||||| | Sbjct 12795 CCGCCACGTAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 12854 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| || |||| || | ||||||||| |||||||| || ||||||||||| | |||| Sbjct 12855 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 12914 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || || ||||| | || | | ||||| || | || || || Sbjct 12915 -ATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCAC 12973 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || ||||| || | ||| ||||| ||||||||||| Sbjct 12974 GTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 13021 >seq6965 Length=79392 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | |||||||||||| | ||| || ||||| |||||||||||| Sbjct 54614 TCCACCGCGAAGACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 54555 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 |||| || |||| |||| ||||||||| ||||| || | ||||||||||| || Sbjct 54554 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGG 54495 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || || ||||| | | | | ||||| || | | || || Sbjct 54494 GATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCAC 54435 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| |||||| || || || || | || ||||||||||||||||| Sbjct 54434 GTCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 54387 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | ||| || ||||| |||||||||||| | Sbjct 54385 CCACCACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 54326 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| |||| ||||||||| ||||| || | ||||||||||| || Sbjct 54325 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGG 54266 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| || || ||||| | | | | ||||| || | | || ||| Sbjct 54265 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACG 54206 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || || || || | || ||||||||||||||||| Sbjct 54205 TCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 54159 >seq5367 Length=20193 Score = 122 bits (134), Expect = 6e-23 Identities = 142/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| || ||| ||| |||| || | ||||||||| ||||| || Sbjct 7867 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 7926 Query 34262 AGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGC 34320 || ||||||||||| | |||| | || |||||||| || || ||||| | || | | Sbjct 7927 AGGCGCTGCTGGTCAGGCGGG-ATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTC 7985 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || |||| | || ||||||| ||||||||| || || || || || |||||||| Sbjct 7986 AATGCTGTCGGATGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAA 8045 Query 34381 GATCTGCAT 34389 ||||||||| Sbjct 8046 GATCTGCAT 8054 >seq8636 Length=68535 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || ||||| ||||| ||||||||||| || Sbjct 28151 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTTTCCTTCTGGATGTTGTAGTCCGAA 28092 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 28091 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 28039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323036409479840