Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6149 152 1e-31 seq1353 118 2e-21 seq8697 98.7 2e-15 seq8320 98.7 2e-15 seq7578 95.1 3e-14 >seq6149 Length=26765 Score = 152 bits (168), Expect = 1e-31 Identities = 852/1346 (63%), Gaps = 67/1346 (5%) Strand=Plus/Plus Query 248430 CAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCGCGCATCAAGAA 248489 |||||| || |||||| || | || |||||||| ||| |||||||||||| || Sbjct 20363 CAAGCGCGATGGGCGCTCTGAGGAAGTCAAGTTCGACAAGATCACGGCGCGCATCACCAA 20422 Query 248490 GCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGCCCAGAAAGTTAT 248549 ||| || || || ||| | || ||| ||| || || ||| | ||||| || | Sbjct 20423 GCTGTGCTACGGACTGAACCCGGACTACGTGGACGCCGTCAAGATCTCGCAGAAGGTCGT 20482 Query 248550 TTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCTGCGGAGACGGC 248609 | ||||| ||| |||| ||||| ||| | || |||||| | || || |||||||| Sbjct 20483 GGCAGGCGTGTACCCCGGTGTAACCACGTCCGAGCTGGACGAGCTGGCCGCCGAGACGGC 20542 Query 248610 GGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCGGGAGGATCGCCGTCT 248668 |||||| | | ||| ||||| |||| ||| |||||| | | | |||||||| | Sbjct 20543 CGCGTACCAGAGCAC-GCAGCACCCAGACTTCTCCAAGCTGGCGGCGCGCATCGCCGTGT 20601 Query 248669 CAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCTGACCT-------- 248720 | | || ||||| | ||||| || ||| || | ||| | | | | Sbjct 20602 CCAACCTGCACAAGAACACGAACAAGGTCTTCAGTGACAACATCGAGGTCTTCCACAAGA 20661 Query 248721 ACATGCCT------ATGGGAT----GG---------TCGCCGATGACGTCCACAC---CG 248758 ||| || | ||| || ||||||| ||||| || | || Sbjct 20662 ACACGCACGAGAAAACGGGCGCCGCGGCGCCGCTCATCGCCGACGACGTGTACGCGCTCG 20721 Query 248759 TCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGT 248818 | || ||| |||| | || ||| || || || | ||| | || || |||| Sbjct 20722 TGATGCAGCACAAGG---ACGAGCTGAACTCGGCCATCATCCACGACCGGGACTTTGAGT 20778 Query 248819 ACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGA 248878 |||| | ||| | ||||||||||| ||| || ||| || | | |||||| Sbjct 20779 ACGACTACTTCGGCTTCAAAACGCTCGAGCGGGGCTACCTCTTCCGCGTGAACGGCAAGG 20838 Query 248879 TCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACA 248938 ||||||| || ||||| ||| | ||||| ||||| | || || |||||| | |||| Sbjct 20839 TCGTGGAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTATCCACAAGCAAGACA 20898 Query 248939 TAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGA--TGACACATGCCAC 248996 | || | || | |||||| ||| | | | || | || || || || Sbjct 20899 TCCAGGCGGCACTGCACACGTACGAGCTCATG--TCACAGATGTTCTTTACGCACGCGAC 20956 Query 248997 ACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTCGTGCTTTCTTC 249052 || |||||||| |||||||| || |||| || |||| |||||||| || | Sbjct 20957 GCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCA----GCTGTCGTCGTGCTTCCTGC 21012 Query 249053 TTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGA 249112 | |||||||| |||||||| | || |||||||| |||||||| || ||| ||| | Sbjct 21013 TGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGCA 21072 Query 249113 TTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGT 249172 | || || | || || || || || | | ||||||||| || | | | Sbjct 21073 TCTCCAAGTGGGCCGGAGGTATTGGCATTAGTATGCACAACATCCGCGCCACGAACAGCT 21132 Query 249173 ACATCAAAGGTACAAATGGGGTCAGTGAT-GGTATCGTACCCCTCCTTCGATGCTTTGAG 249231 ||||| || || || || ||| | || ||| | ||| | || | ||| | Sbjct 21133 ACATCCGCGGCACGAACGGA-TCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAAC 21191 Query 249232 TCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTAT 249288 ||| || | | | |||||| ||| || || || || ||||||||||| || Sbjct 21192 GACACGGCTCGCTATGTGGACCAGGGCGGAGGCAAGCGCAAAGGATCGTTCGCCATCTAC 21251 Query 249289 TTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAAC 249348 |||| |||||||||||| | || ||||||||||| || ||||| |||| ||| Sbjct 21252 CTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGTAAGAATCACGGTAAC 21311 Query 249349 GAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGC 249408 ||||| | ||||| ||| | || |||| ||||||||| |||| |||||||| Sbjct 21312 GAGCTGCACCGCGCGCGCGACTTGTTTTACGCTCTGTGGGTCCCCGATCTGTTCATGAAG 21371 Query 249409 CGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATC 249468 ||||| |||| | ||| | |||| || | | || ||| ||||| | ||| | Sbjct 21372 CGCGTGGAGGCGAATGGCAAGTGGAGCCTGTTCTGCCCCAACGAGGCCCCCGGACTCTAC 21431 Query 249469 GATCTACACGGCGCCGACTTCGACCAAGC-CTATAAGAAATACGAATCCAACGGCATCG- 249526 || |||| ||| ||||| | || || |||| ||||| | || || Sbjct 21432 GAGTGCTGGGGCGACGAGTTCGA-GACGCTGTACGAGAAGTACGAGAAGGAGGGACGCGC 21490 Query 249527 --GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCCCAGATAGA 249581 ||||||| ||||| || | | || || || | | |||| | ||||| || Sbjct 21491 GCGCAAGACGATCAACGCCCAGCAGCTGTGGTTCGCCA---TCCTGGACGCGCAGATTGA 21547 Query 249582 GACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGC 249640 |||||| | ||||| | || ||| ||| |||||| |||| |||| ||||| | | Sbjct 21548 GACAGGCGTGCCGT-TCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGA 21606 Query 249641 ATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCAATACTCGTCCAAG 249699 | || || || |||||||| || | || ||| ||| | || | ||| |||| Sbjct 21607 ACCTCGGCACGATCCGCTCAAGCAACTTGTGCTGC-GAGATTATGGAGTACACGTCGCCC 21665 Query 249700 GAGGAGATTGCCGTCTGCAACCTGGC 249725 || ||| | || || ||||||||||| Sbjct 21666 GATGAGGTGGCGGTGTGCAACCTGGC 21691 >seq1353 Length=21349 Score = 118 bits (130), Expect = 2e-21 Identities = 258/381 (68%), Gaps = 8/381 (2%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || |||||||| ||| |||| || || || || ||||||||||| ||||| | || Sbjct 8274 CTGCCGCATTTGCTGTTCTACGGACCCCCAGGCACGGGCAAGACGTCTACCATTGTCGCC 8215 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAA---CATGAGAGAGCGCGTGCTCGAGCTGAAC 254117 ||| || || || ||| || || || | ||| | || || |||||| Sbjct 8214 GTGGGGCGTCAGCTCTTCGGCCCGGATTTTCGCAAGAACGGCCGCTTCCTGGAACTGAAC 8155 Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATG 254177 || || || || || || | | || || || || ||| |||||| ||| || || | Sbjct 8154 GCGTCCGATGACCGAGGCATTAAGGTGGTGCGAGAGAAGGTCAAGAGCTTCGCCCAG--G 8097 Query 254178 TCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCG 254237 || || | | | | ||| || ||||||||| || | | ||||| |||||| Sbjct 8096 GCGCCATCAGCACTGTCAGTGGTCTG-CCTCCTTTCAAGATCATCGTGCTGGATGAGGCG 8038 Query 254238 GACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGA-GACGCACTCCGT 254296 ||| ||||||||| ||||||||| || || || ||||| | |||||| ||| ||||| Sbjct 8037 GACTCCATGACGGGCGACGCGCAATCGGCACTGCGCCGCATGATGGAAGACT-ACTCCAA 7979 Query 254297 TGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTC 254356 || ||||| || ||||| | || ||||| ||| ||||| | || |||| || Sbjct 7978 GGTCACGCGCTTCTGCCTCATCTGTAACTATGTGAGCCGCATCATTGAGCCTGTGGCCTC 7919 Query 254357 TCGGTGCGCCAAGTTTCGATT 254377 || ||||||||||| || || Sbjct 7918 GCGATGCGCCAAGTTCCGCTT 7898 >seq8697 Length=2752 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | |||||||| ||||||||||| ||||| || Sbjct 366 ACACCAGCCTTGGAGTACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGTAGC 425 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTT-GTCGTACCCCAG 157362 || |||||||||||||| ||||| ||||| |||||| | ||| | || | ||||| Sbjct 426 GAGATCATGTCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACGCA-CCCAG 484 Query 157363 CTGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTA 157398 | || || | | ||| ||||| |||| |||||| Sbjct 485 CGAGTACAACAGGCGGTCGGCCACGAACTCGATGTA 520 >seq8320 Length=26225 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | |||||||| ||||||||||| ||||| || Sbjct 366 ACACCAGCCTTGGAGTACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGTAGC 425 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTT-GTCGTACCCCAG 157362 || |||||||||||||| ||||| ||||| |||||| | ||| | || | ||||| Sbjct 426 GAGATCATGTCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACGCA-CCCAG 484 Query 157363 CTGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTA 157398 | || || | | ||| ||||| |||| |||||| Sbjct 485 CGAGTACAACAGGCGGTCGGCCACGAACTCGATGTA 520 >seq7578 Length=27278 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || || || | |||||| || || |||||||| ||||| |||||||||||| | | Sbjct 20801 ATGGCGCAGCGGCTCTGGATGGGCTCGATGATCTTGGTCGAGTTGTTGCAGGCCAGTGCA 20860 Query 115462 AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGT 115521 |||||||| ||| |||| | | ||||| | || ||||||||||| ||| | | Sbjct 20861 AACCGCGTGGTGGCCGAGAAGATCTCCATAGTGCGGCGCAGCGCCTGTTGAGCCGCGGCC 20920 Query 115522 GTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||||||||| |||||||| || | || ||||| Sbjct 20921 GTCATCGAGTCGGCCTCGTCCAGGATCACGATCTT 20955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073642044764352