Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6149 340 2e-88 seq9025 145 7e-30 seq6965 122 8e-23 seq5367 122 8e-23 >seq6149 Length=26765 Score = 340 bits (376), Expect = 2e-88 Identities = 1221/1892 (65%), Gaps = 39/1892 (2%) Strand=Plus/Minus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 ||||||||| || ||||| ||||||| || ||| ||| | || |||||||| Sbjct 22613 CTTGTCCACGGTGAACTGGATGGCGTCGGCTTTCGGACGTCCGCGCATGTAGTACATGCC 22554 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||| || ||| ||||||| ||||| || || || |||||||| || | |||| Sbjct 22553 CGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAACTTACTGATCGTCGG 22494 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | |||| | || |||||||| ||||| || | || || || || || | Sbjct 22493 GTCGGCAATGTGAATGTTCAACGACTGGCTCTGGCAAATGTAGGCGCCACGGTCCGCCGA 22434 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 || | | || | | | |||||||| || ||||||||| | | ||| || Sbjct 22433 CAGGTCCAACACGGCCTTCTGCTTGATTTCCCACACTGTCTTGTACTTCTCCTTGACCTG 22374 Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAAT 22404 ||| || |||| | | |||| ||||| || | | |||| || | Sbjct 22373 GTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCAGCCAGGATCTGGTTGCGCAC 22314 Query 22405 CGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA-CTT 22463 | | |||| | || | || ||| ||||| | || | |||||| | | | Sbjct 22313 CTCAGGCGTCCAGATTCCCAGCTCGATCAGCTCTTTCATGAGGTACTTGTTCACGATCGT 22254 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 ||| ||| || | || |||||||| | ||| ||||| || || |||| |||| || | Sbjct 22253 GAA-CTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTATACGGCTCGATGGACT 22195 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | ||||| |||| |||||||| ||||| || || |||||||| |||| || ||||||| Sbjct 22194 CGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGT 22135 Query 22584 TTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGA-- 22641 | | | ||||||||| | || ||||||| | ||||||||||| | |||| Sbjct 22134 TGCGTATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGTCCAGTCCCACAAACCGGAAG 22075 Query 22642 -CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTT 22700 ||| ||||| | ||||||| ||| | || || | || || || || ||| | Sbjct 22074 ACGGGGTCAC---GCCCCACATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGAGCCCT 22018 Query 22701 CGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACGCGCCG 22759 | |||| |||||||| || | ||| | || || | || ||||| | || Sbjct 22017 GGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CATCGACGTCTCCATAGAAGCG 21959 Query 22760 TAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCG-GCGACGCTTTCGTACGG 22818 || || || ||||||||||| ||| |||| | ||| ||| ||| ||| ||| ||| Sbjct 21958 TAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGCTTGCGG-GCTCTCGAACG- 21901 Query 22819 CATACG-CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 |||| ||| | | || || ||||| | |||||| || || ||||| | ||| |||| Sbjct 21900 CATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACACCAATACCAACCGGGCGGT 21841 Query 22878 TTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGT 22937 || || ||| |||||| | || || | || ||| || | | Sbjct 21840 GGCGCATGTTGGACTTGCGTGCCTCCTCGACGGGGTAGTAGTTGACATCAATGACCTTAT 21781 Query 22938 TCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCG 22997 ||||||| | |||||| | || || | | ||| | | || || Sbjct 21780 TCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAACACTCC-- 21723 Query 22998 ATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTT 23057 || | || |||||||| || ||| | || || || ||||| || |||||||| || Sbjct 21722 ATCCTCCA-CAAACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGG 21664 Query 23058 TGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGC 23117 ||||||||||| | ||| ||| || | ||||| | |||||||| | || Sbjct 21663 GCGACGTGTACTCCATAATCTCGCAGCACAAGTTGCTTGAGCGGATCGTGCCGAGGTTCT 21604 Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 |||||| || || ||| || |||||||| |||||| ||||| ||| ||||| | Sbjct 21603 GCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCTGTCTCAA 21544 Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT-GAACACGTCGCACGTACCTG 23236 ||||| || | ||| || ||||| ||| |||| || | | || || | | Sbjct 21543 TCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCGTTGATCGTCTTGCGCGCGCGTC 21484 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 ||| |||| |||||||| | ||||| || || || ||| | || | || ||| || Sbjct 21483 CCTCCTTC-TCGTACTTCTCGTACAGCGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGT 21425 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTT---TCAACGCGTCTC 23353 ||||| | | | || || | || |||||| | | |||| || ||||| || Sbjct 21424 CCGGGGGCCTCGTTGGGGCAGAACAGGCTCCACTT---GCCATTCGCCTCCACGCGCTTC 21368 Query 23354 ATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTG 23413 || || ||||| || | ||| |||||||| |||| ||||| ||||| | ||| || Sbjct 21367 ATGAACAGATCGGGGACCCACAGAGCGTAAAACAAGTCGCGCGCGCGGTGCAGCTCGTTA 21308 Query 23414 CCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAA 23473 ||| ||||| || |||| || || |||||||| || ||||||||||| ||||| Sbjct 21307 CCGTGATTCTTACGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAG 21248 Query 23474 ACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTG 23533 | ||| |||| || | ||| |||||||| || || || || ||||||| |||| Sbjct 21247 ATGGCGAACGATCCTTTGCGCTTGCCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTG 21188 Query 23534 TACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAA 23593 | || || ||||| || | || |||||||| | ||| | || ||| | | | Sbjct 21187 AAGACCCTCAGCATGGGGATGATCCCGTTGGATGATCCG--TTCG--TGCCGCGGATGTA 21132 Query 23594 CCTTTT----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATAT 23649 || || || || | |||||| | | || || |||||| || | || || || Sbjct 21131 GCTGTTCGTGGCGCGGATGTTGTGCATACTAATGCCAATACCTCCGGCCCACTTGGAGAT 21072 Query 23650 CATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGAC 23709 |||||| || || || |||||||| |||||||| || ||| || | | || | Sbjct 21071 GCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAG 21012 Query 23710 CAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGC 23769 || ||| ||||| |||| |||| ||||| |||| || || || || | || Sbjct 21011 CAGGAAGCACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGC 20952 Query 23770 GTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTC 23829 |||||||||| | | ||||| || | |||||||| | || || | ||||| | Sbjct 20951 GTGCGTAAAGAACATCTGTGACATGAGCTCGTACGTGTGCAGTGCCGCCTGGATGTCTTG 20892 Query 23830 TCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGAC 23886 ||| ||||| | || |||||||| ||||| | || || | || ||||| | Sbjct 20891 CTTGTGGATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTT--- 20835 Query 23887 GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTT 23946 |||||| | ||| || || || | | |||||| || || || ||||| || | Sbjct 20834 GCCGTTCACGCGGAAGAGGTAGCCCCGCTCGAGCGTTTTGAAGCCGAAGTAGTCGTACTC 20775 Query 23947 AAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 |||||| || ||||| | |||||||| |||| Sbjct 20774 AAAGTCCCGGTCGTGGATGATGGCCGAGTTCA 20743 >seq9025 Length=46235 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| |||||| |||| ||||| |||||||| | ||||| || ||||| Sbjct 13022 CATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACTTTGGACGTGGAGCCGTC 12963 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | || || |||| ||| |||||||||||| | ||||| ||||| Sbjct 12962 GGACTCGATCGACAATGTGAAGCAGAAAATTCAAGACAAGGAAGGCATCCCGCCTGACCA 12903 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||||||||| ||| | || ||| | || ||||||| || || Sbjct 12902 GCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAA 12843 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || || ||||| || | || | ||||||| Sbjct 12842 CATCCAGAAGGAGTCAACGCTACACCTGGTGCTGCGTCTACGTGGCGGTA 12793 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| |||||| |||| ||||| |||||||| | ||||| || ||| Sbjct 13252 AAGATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACTTTGGACGTGGAGCCG 13193 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | || || |||| ||| |||||||||||| | ||||| ||| Sbjct 13192 TCGGACTCGATCGACAATGTGAAGCAGAAAATTCAAGACAAGGAAGGCATCCCGCCTGAC 13133 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||||||||| ||| | || ||| | || ||||||| || Sbjct 13132 CAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTAC 13073 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || ||||| || Sbjct 13072 AACATCCAGAAGGAGTCAACGCTACACCTGGTGCT 13038 >seq6965 Length=79392 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| |||| || || |||||||| | ||||| || || Sbjct 54156 AACATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCT 54215 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || ||| |||| | || || |||| ||| |||||||||||| | || || ||| Sbjct 54216 TCGGACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGAC 54275 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||| | || ||||| ||||| ||| |||| ||| | || ||||||| || Sbjct 54276 CAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 54335 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || ||||| || Sbjct 54336 AACATCCAGAAGGAGTCTACCCTGCACCTGGTGCT 54370 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||| || || |||||||| | ||||| || || || Sbjct 54386 CATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCTTC 54445 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | || || |||| ||| |||||||||||| | || || ||||| Sbjct 54446 GGACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCA 54505 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | || ||||| ||||| ||| |||| ||| | || ||||||| || || Sbjct 54506 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 54565 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 54566 CATCCAGAAGGAGTCTACCCTGCACCTGGTGCT 54598 >seq5367 Length=20193 Score = 122 bits (134), Expect = 8e-23 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || || || ||||| ||||| || || || ||||| | ||||| || || Sbjct 8058 AATCATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCATCACGCTGGACGTGGAGCC 7999 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||||||| | || | ||||| |||| ||| ||||||||||||| | ||||| || Sbjct 7998 ATCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGA 7939 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || ||||||||||| ||| | || ||| Sbjct 7938 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGAC 7899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445716033968880