Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq7165 181 9e-41 >seq7165 Length=36682 Score = 181 bits (200), Expect = 9e-41 Identities = 404/596 (68%), Gaps = 14/596 (2%) Strand=Plus/Minus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || ||||||||||| || || || |||||||| | ||| | ||| || || Sbjct 20064 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCACCGATAACGTGAATAAATTCACCA 20005 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || |||| || | || || || | || ||| || | |||||||| || |||||| Sbjct 20004 GGTTTCAGCCCTGCCACTTGTGCCACTAGTCGCGTGAGCAACGCGTAGCTTGCAATGTTA 19945 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 ||||| || || |||||||| ||||| || | |||||||| ||| || |||| || || Sbjct 19944 AACGGCACACCAAGGCCCATATCGGCCGAGCGCTGGTACATCTGACACGACAATTCGCCG 19885 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 |||||||| ||||| || || | |||||| || || || |||||| || || Sbjct 19884 TCCGCCACGTAGAACTGGCAGAACATGTGACACGGCGGCAGTGCCATCTCATTCAGATCA 19825 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATC--GTGGGGCCGCCTGTTAATTA-GA 21221 || ||||||||||| ||| ||||| || || || ||| || | ||| || Sbjct 19824 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCATCGGGTTCGTACGCAGCTTATGA 19765 Query 21222 TCCACCAC-GTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCT 21280 |||| | ||| ||||||||||| ||||| || ||| | |||| || | Sbjct 19764 ATCACCTCAGTA----AGCTGGTCCACTCCCTGTCCAGTGTAATCTGCGTGCATGTCCGT 19709 Query 21281 GTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCG 21340 ||||| || |||||||| | ||||||||| ||||| ||||| || ||||| || | Sbjct 19708 GTACTTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACCGGTCCGAGATCACCTACTTC 19649 Query 21341 GCG-GTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTT 21399 ||| ||| | || || | ||| | | | |||||||| | | ||||||| || | Sbjct 19648 GCGCGTCTGC-AATCCTCGGCTATCCAGATACTCCCGGGACCCATTCCCGTCCCAGATGT 19590 Query 21400 TTACGCCGCGGCGCGACAGTTCG-GTG-GAGTCGGTGGAGCCCCTGATAAACCACAGCAA 21457 | | | || ||| || ||| | | ||| ||| |||||||||||||||| Sbjct 19589 GAATGTCCTTCTGCTGCAG--CGTGTGCGCGCTCGTGTCGCCGCTGATAAACCACAGCAG 19532 Query 21458 CTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGT 21513 ||||||| | ||||| | ||| ||||| | ||||| || | ||| || ||| ||| Sbjct 19531 CTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGT 19476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427728874992720