Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq7165 122 6e-23 >seq7165 Length=36682 Score = 122 bits (134), Expect = 6e-23 Identities = 358/547 (65%), Gaps = 11/547 (2%) Strand=Plus/Minus Query 25425 AGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCC 25484 || || || ||||| | ||| || || || ||||| || | | ||| | ||| || || Sbjct 20064 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCACCGATAACGTGAATAAATTCACCA 20005 Query 25485 GGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTA 25544 |||| ||||| | || | |||| | |||||| | |||||| || |||||| Sbjct 20004 GGTTTCAGCCCTGCCACTTGTGCCACTAGTCGCGTGAGCAACGCGTAGCTTGCAATGTTA 19945 Query 25545 AAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTC 25604 || || || || | ||||| || || || | |||||| | ||||||||| | || | Sbjct 19944 AACGGCACACCAAGGCCCATATCGGCC-GAGCGCTGGTACATCTGACACGACAATTCGCC 19886 Query 25605 GTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTC 25664 ||| |||||| ||||| || | ||| ||||| || || || || || || Sbjct 19885 GTCCGCCACGTAGAACTGGCAGAACATGTGACACGGCGGCAGTGCCATCTCATTCAGATC 19826 Query 25665 TTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT-GTCC----CTGATA 25719 ||||||||| || ||| | ||| | | ||| ||||| || | || || Sbjct 19825 AGCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCATCGGGTTCGTACGCAGCTTATG 19766 Query 25720 AGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCC 25779 | ||| | || ||||| ||||| ||| || | ||| ||||| ||||||| Sbjct 19765 A-ATCACCTCAGTA----AGCTGGTCCACTCCCTGTCCAGTGTAATCTGCGTGCATGTCC 19711 Query 25780 GTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCT 25839 ||||||| || || |||| | ||||||||| ||||| |||||||| || || || || Sbjct 19710 GTGTACTTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACCGGTCCGAGATCACCTACT 19651 Query 25840 TCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATC 25899 || | || || || | |||||| | | || | ||| ||||| |||||||||| Sbjct 19650 TCGCGCGTCTGCAATCCTCGGCTATCCAGATACTCCCGGGACCCATTCCCGTCCCAGATG 19591 Query 25900 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGC 25959 | | |||||| ||| | | | | ||| || |||| |||||||||||| Sbjct 19590 TGAATGTCCTTCTGCTGCAGCGTGTGCGCGCTCGTGTCGCCGCTGATAAACCACAGCAGC 19531 Query 25960 TCCGCCG 25966 ||| ||| Sbjct 19530 TCCTCCG 19524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340100129485347