Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6149 289 7e-73 seq7165 154 4e-32 >seq6149 Length=26765 Score = 289 bits (320), Expect = 7e-73 Identities = 635/946 (67%), Gaps = 4/946 (0%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || |||||||| ||||| || | | || || || || | ||| ||| |||| || Sbjct 20943 TTTACGCACGCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCG 21002 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || ||| ||||||| || || ||||| || | ||||| || ||| | Sbjct 21003 TGCTTCCTGCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAG 21062 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || || || ||||| | || ||||| | || || Sbjct 21063 TGCGCGTGCATCTCCAAGTGGGCCGGAGGTATTGGCATTAGTATGCACAACATCCGCGCC 21122 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 |||||| ||||| |||||||| |||| || || ||| | | |||||||| | Sbjct 21123 ACGAACAGCTACATCCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTGAGG 21182 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || || || | || || | || || |||||||| ||||| ||||||||||| |||| Sbjct 21183 GTCTTCAACGACACGGCTCGCTATGTGGACCAGGGCGGAGGCAAGCGCAAAGGATCGTTC 21242 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAA 363905 || || || || ||||| || ||||| | || ||||| || ||||| || || || Sbjct 21243 GCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGTAAGAAT 21302 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 ||| || || ||| || || || || |||| || || || ||||| | || | Sbjct 21303 CAC-GGTAACGAGCTGCACCGCGCGCGCGACTTGTTTTACGCTCTGTGGGTCCCCGATCT 21361 Query 363966 TTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCC 364025 || ||||||||||||||||| | || ||| || || ||||| |||| || Sbjct 21362 GTTCATGAAGCGCGTGGAGGCGAATGGCAAGTGGAGCCTGTTCTGCCCCAACGAGGCCCC 21421 Query 364026 AGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGA 364085 || || | ||| ||||| ||||| | | | || ||||| ||||| || ||| Sbjct 21422 CGGACTCTACGAGTGCTGGGGCGACGAGTTCGAGACGCTGTACGAGAAGTACGAGAAGGA 21481 Query 364086 GGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCA 364145 |||| || || ||||| || ||| ||| |||| ||||| |||||| |||| |||| Sbjct 21482 GGGACGCGCGCGCAAGACGATCAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGCA 21541 Query 364146 GATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCA 364205 |||||||||||| || | ||| ||||||| || || |||||||||||| ||||| Sbjct 21542 GATTGAGACAGGCGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACCA 21601 Query 364206 GCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGC 364265 |||| |||| || || || | |||||| | || ||||||||| || ||||| | Sbjct 21602 GCAGAACCTCGGCACGATCCGCTCAAGCAACTTGTGCTGCGAGATTATGGAGTACACGTC 21661 Query 364266 TCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGA 364325 ||||| ||| || || || ||||| ||||| | || || || |||||| | || Sbjct 21662 GCCCGATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGAGGA 21721 Query 364326 TGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGA 364385 ||| || || ||||| | || || || || ||| | | || | || | | Sbjct 21722 TGGAGTGTTCAACTACCAGAAGCTGTACGAGGTGACCAAGGTGGTGACCCGGAACTTGAA 21781 Query 364386 CAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGTC 364444 ||||| || || || || || || || | || | || || || ||||| | Sbjct 21782 TAAGGTCATTGATGTCAACTACTA-CCCCGTCGAGGAGGCACGCAAGTCCAACATGCGCC 21840 Query 364445 ATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 | |||||| ||||| ||||||| ||||| ||||| || | ||||| Sbjct 21841 ACCGCCCGGTTGGTATTGGTGTCCAGGGTCTCGCGGATGCATTTAT 21886 >seq7165 Length=36682 Score = 154 bits (170), Expect = 4e-32 Identities = 322/473 (68%), Gaps = 10/473 (2%) Strand=Plus/Plus Query 111482 CGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTA 111541 ||||| ||||||||||||||| || ||||| || || |||||||| ||||| || | || Sbjct 19648 CGAAGTAGGTGATCTCGGACCGGTCTACGGCTTCCAGTGGCGCCATTTTGGCGCCAAGTA 19707 Query 111542 CAAAACCATGCACGACTCATATGATTC---ACAGGGAACTGATCAA-TTACAGAATGTCA 111597 || |||||||| || || | | ||||||| || || |||| || || | Sbjct 19708 CACGGACATGCACG---CAGATTACACTGGACAGGGAGTGGACCAGCTTACTGAG-GTGA 19763 Query 111598 TTGATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCA 111656 || || || | | || ||||| | || || || | || ||| |||||||| Sbjct 19764 TTCAT-AAGCTGCGTACGAACCCGATGGACCGCCGGATCGTGTTGTCTGCGTGGAACCCT 19822 Query 111657 AATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACAC 111716 || || | | |||||||| || || ||||| | | |||||||| || || Sbjct 19823 GCTGATCTGAATGAGATGGCACTGCCGCCGTGTCACATGTTCTGCCAGTTCTACGTGGCG 19882 Query 111717 GACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCG 111776 ||||| | || || || ||||| ||||| || || ||||| || |||||||| ||| Sbjct 19883 GACGGCGAATTGTCGTGTCAGATGTACCAGCGCTCGGCCGATATGGGCCTTGGTGTGCCG 19942 Query 111777 TTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAA 111836 ||||| |||||||| ||||| | || || | || | || || | || || ||| Sbjct 19943 TTTAACATTGCAAGCTACGCGTTGCTCACGCGACTAGTGGCACAAGTGGCAGGGCTGAAA 20002 Query 111837 CCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCA 111896 || |||||||| |||||||||||||| || |||||||| || |||||| |||| | Sbjct 20003 CCTGGTGAATTTATTCACGTTATCGGTGACGCGCATGTGTATCTGAACCACGTTGAGCCT 20062 Query 111897 CTTAAAACACAGTTGAAGCGCAAACCATACGATTTCCCAACGATTCATATCAA 111949 ||| ||| ||| | | ||| ||| ||||||||| |||| || || Sbjct 20063 CTTCAAAAGCAGCTTACGCGTTCACCGCGGCCATTCCCAACGCTTCACATTAA 20115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303202655768498