Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6149 273 2e-68 seq6965 152 5e-32 seq9025 141 9e-29 seq5367 107 2e-18 seq8636 87.8 2e-12 >seq6149 Length=26765 Score = 273 bits (302), Expect = 2e-68 Identities = 1127/1750 (64%), Gaps = 42/1750 (2%) Strand=Plus/Minus Query 144751 GCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGACGT 144810 ||||| |||||||||||||| ||||| ||| ||| | |||| ||| || ||||| Sbjct 22571 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGT 22512 Query 144811 CATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAATGAA 144870 || | | | ||| || || || | | || | ||| ||||| || |||| | Sbjct 22511 CAACTTACTGATCGTCGGGTCGGCAATGTGAATGTTCAACGACTGGCTCTGGCAAATGTA 22452 Query 144871 AGCGTTGCGGTCGGCGGCCATCTCAATCATA--CGTTTGCATTTCATTTCCCAAGCGGTC 144928 ||| ||||| || | || || | || | | ||| || |||||||| | ||| Sbjct 22451 GGCGCCACGGTCCGCCGACAGGTCCAACACGGCCTTCTGC--TTGATTTCCCACACTGTC 22394 Query 144929 TTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTGTGC 144988 |||||| || | |||||||||||| | | | ||| | || || || Sbjct 22393 TTGTACTTCTCCTTGACCTGGTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCA 22334 Query 144989 GCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTCAATT 145048 || | || ||| |||| || | ||| | | | | || ||||| || | || Sbjct 22333 GCCAGGATCTGGTTGCGCACCTCAGGCGTCCAGATTCCCAGCTCGATCAGCTCTTTCATG 22274 Query 145049 AAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGAC 145108 | ||||| || |||| | ||||| || |||| ||| || || |||| ||| ||| Sbjct 22273 AGGTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGAC 22214 Query 145109 GTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATG 145168 || | || || | |||||||| ||||||| || ||||| |||| || |||||||| Sbjct 22213 GTATACGGCTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATC 22154 Query 145169 TACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCC 145228 ||||| | | || ||||| | ||||||||| | | || ||||| |||| | | Sbjct 22153 GGAGCCACGAGGAGCGAGTTGCGTATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGTC 22094 Query 145229 CAATCCCATAGC---GAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCG 145285 || ||||| | |||| ||| ||||| ||||||||||| |||| || || |||| | Sbjct 22093 CAGTCCCACAAACCGGAAGACGGGGTCACGCCCCACATGTCGAACTGGAAGATACCCTTG 22034 Query 145286 CTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAAC- 145343 ||||| || ||| || || | || || | |||| | ||||||| ||| || | Sbjct 22033 CTGGCAGGCGAGCCCTGGAACG-TCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CATCG 21976 Query 145344 TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTT 145403 || ||||| || || | || || |||||| || | | ||||||| |||| Sbjct 21975 ACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGCTT 21916 Query 145404 CATCGCTCTCGTACGGCAT-GCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCC 145462 ||||||| || |||| | || || | ||| ||||| ||||| ||||| | || Sbjct 21915 GCGGGCTCTCGAAC-GCATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACACCA 21857 Query 145463 ACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATT 145521 | || | || || || ||||||| | | | ||| ||||| || || | | | Sbjct 21856 ATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGTGCCTCCTCGACGGGGTAGTAGTTG 21797 Query 145522 ACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTC 145581 || || || | ||||||||||| || || ||||| || | | || ||| | Sbjct 21796 AC-ATCAATGACCTTATTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCTTCTG 21738 Query 145582 AAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATT 145641 ||| ||| ||| || | ||||| | | || ||| | ||||||| || Sbjct 21737 GTAGTTGAAC----ACTC--CATCCTCCACAAACTTGGGGAGGGCCACAGACGCCAGGTT 21684 Query 145642 ACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTAC 145700 || || ||| ||| || |||| || |||| | | |||||| |||||| ||||| Sbjct 21683 GCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAATCTCGCAGCACAAGTTGCTTG 21625 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 | ||| || || || || ||||| || || | |||| |||||||||||| |||| Sbjct 21624 AGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCA 21565 Query 145761 TGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGC 145818 || |||| |||| ||||| | ||||| |||| ||| ||| || | ||| || Sbjct 21564 TGAACGGCACGCCTGTCTCAATCTGCGCGTCCAGGATGGCGAAC--CACAGCTGCTGGGC 21507 Query 145819 ACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGC 145878 | | || | ||| ||||| | ||||| ||| ||| ||| ||| ||| | Sbjct 21506 GTTGATCGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTCTCGTACAGCGTCTCGAACTC 21447 Query 145879 GGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCC 145938 | || |||| ||| | || ||||| || |||||| || | ||| ||| ||| Sbjct 21446 GTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCGTTGGGGCAGAACAGGCTCCACTTGCC 21387 Query 145939 GTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT--CG 145996 || || | ||||||| ||| |||| ||| || |||||||| ||||| | ||||| || Sbjct 21386 ATTCGCCTCCACGCGCTTCATGAACAGATCGGGGACCCACAGAGCGTAAAACAAGTCGCG 21327 Query 145997 CGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTT---CAAATTAAGCACACT-ATAGAT 146052 ||||| |||| ||| | || || || ||| || | || | ||| | | Sbjct 21326 CGCGCGGTGCA--GCTC-GTTACCGTGATT--CTTACGCAGCTCCAGGA-ACTCGAACAC 21273 Query 146053 GTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTG 146109 ||| ||||||||||| || | |||| ||||| | |||||| || ||| || ||||| Sbjct 21272 GTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGATCCTTTGCGCTTGCCTCCGCCCTG 21213 Query 146110 GTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTAC 146169 |||||| | || || ||| ||| ||||| | || |||||| || ||| ||| | Sbjct 21212 GTCCACATAGCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATGA 21153 Query 146170 GCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAG 146229 |||||||| | || | || || ||| | | || | | | | ||| | Sbjct 21152 TCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTAATGCCAAT 21093 Query 146230 ACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAAT 146289 ||| ||| | ||||||| || ||||| | |||||| ||||| ||||| ||||| Sbjct 21092 ACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAAT 21033 Query 146290 GCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGC 146349 ||| | ||| | ||||| |||||||| ||| ||||| |||||| || || Sbjct 21032 CGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGTGCCGGC 20973 Query 146350 CGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTC 146409 || | ||| || ||||||||||||| | | | ||| | | ||||| | Sbjct 20972 GTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGACATGAGCTCGTACGTGTG 20913 Query 146410 GATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTG 146469 | || | || ||||| | || || |||| || |||||||||| ||| || || Sbjct 20912 CAGTGCCGCCTGGATGTCTTGCTTGTGGATACCCAGCGCCACGCGCATGATCATCTGCTG 20853 Query 146470 GGGCCGCTCC 146479 ||| |||||| Sbjct 20852 GGGGCGCTCC 20843 >seq6965 Length=79392 Score = 152 bits (168), Expect = 5e-32 Identities = 123/149 (83%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||||||| | || | ||| |||||||| || |||||||| |||||| Sbjct 54613 CCACCGCGAAGACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 54554 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| |||||||||||||| |||||| Sbjct 54553 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGG 54494 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || ||||| ||||| |||||||||||| Sbjct 54493 ATGCCTTCCTTGTCTTGGATTTTCTGCTT 54465 Score = 149 bits (164), Expect = 6e-31 Identities = 123/150 (82%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||||| | || | ||| |||||||| || |||||||| ||||| Sbjct 54386 GCCACCACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 54327 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| |||||||||||||| ||||| Sbjct 54326 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGG 54267 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| ||||| ||||| |||||||||||| Sbjct 54266 GATGCCTTCCTTGTCTTGGATTTTCTGCTT 54237 >seq9025 Length=46235 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| ||||||||| | |||| || |||||||| || |||||||| ||||| Sbjct 13022 GCCACCGCGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCT 13081 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| | || | ||||||||||| || || Sbjct 13082 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGG 13141 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||||||||||| | | || | | || | | ||| | Sbjct 13142 GATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCAC 13201 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | || | || || || || | ||| || ||||| |||||||| Sbjct 13202 GTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 13249 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||||||||| | |||| || |||||||| || |||||||| |||||| Sbjct 12795 CCGCCACGTAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 12854 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| | || | ||||||||||| || ||| Sbjct 12855 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 12914 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||||||||| | | || | | || | | ||| | | Sbjct 12915 ATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACG 12974 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || || || | ||| || ||||| ||||||||| Sbjct 12975 TCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 13022 >seq5367 Length=20193 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 7865 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 7924 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || ||||| ||||| ||||| |||||||||||||| | | Sbjct 7925 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 7984 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || || || || || | Sbjct 7985 CAATGCTGTCGGATGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAA 8044 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 8045 AGATCTGCATGA 8056 >seq8636 Length=68535 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | || ||||| || |||||||| || Sbjct 28151 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTTTCCTTCTGGATGTTGTAGTCCGAA 28092 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 28091 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 28032 Query 131128 ATTCCT 131133 |||||| Sbjct 28031 ATTCCT 28026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471959468453760