Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq9025 95.1 8e-15 >seq9025 Length=46235 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||| ||||| || || || |||||| || || ||||| || | Sbjct 13023 CCACCGCGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 13082 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || || || || || ||||| || || || | ||| Sbjct 13083 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 13142 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAAC 38269 | |||||| ||||| |||||| ||||||||||| | || | || | || || || Sbjct 13143 ATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTC-CGACGGCTCCAC 13201 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || || || || |||||||| || |||||||| |||||||| || Sbjct 13202 GTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 13252 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||| || | | ||||| ||||| || || || |||||| || || ||||| || Sbjct 12792 TTACCGCCACGTAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCG 12851 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || || |||| || | || || || || || || ||||| || || || | Sbjct 12852 CTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGC 12911 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTC 38266 |||| |||||| ||||| |||||| ||||||||||| | || | || | || || Sbjct 12912 GGGATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTC-CGACGGCTC 12970 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || || || || |||||||| || |||||||| ||||||||| Sbjct 12971 CACGTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 13022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334910301274409