Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq8569 214 4e-50 seq8697 176 9e-39 seq8320 176 9e-39 seq3502 118 2e-21 seq8986 102 2e-16 seq6149 100 6e-16 >seq8569 Length=27754 Score = 214 bits (236), Expect = 4e-50 Identities = 671/1021 (66%), Gaps = 45/1021 (4%) Strand=Plus/Minus Query 279355 TGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCC 279414 |||| |||| || ||||||||||| |||||||| | ||||||||| ||| |||||| Sbjct 17616 TGTGCAACTGCGAGTTCTCGCTCGCCTATGGTGGTATGATTCTGCTGAACAACGCCCGCC 17557 Query 279415 TCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCA 279474 | | | ||||||||| |||| || ||||| ||| ||||| || |||||| | Sbjct 17556 TTCGCCTGAAGCGTGGCCACCGTTACGGTCTGTGCGGCCCCAACGGTTGTGGTAAGTCGA 17497 Query 279475 CTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGAGGTAA 279534 | || |||||||| || | ||||||||||| || || || || | | || ||| | | Sbjct 17496 CGCTGATGCGCGCTATCTCCAACGGTCAGCTCGAGGGCTTCCCCAGCCGGTCCGAGCTGA 17437 Query 279535 GGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTTCGACT 279594 ||| |||| || |||||| || | | | || | || | ||| | |||| Sbjct 17436 AGACTGTGTTCGTTGAGCACAACCTGCAGGCTTCGGAGGCTGAGTTGTCCGTGGTGGACT 17377 Query 279595 TCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCCAGAAAC 279654 || | | || | ||| | | | || ||| ||| || | | || || Sbjct 17376 TCATCCTGGTGGA---TGAGGACCTCAAGAACACTCCTCGTGACGAGGTG--CAGGACAC 17322 Query 279655 T---GGAGGCCAATGGTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCTGTCG 279710 | ||| || ||| ||| | || |||| | | ||||| | || ||| Sbjct 17321 TCTCGGAAGCG--TGGGTTTCACCCCGGAGATGCAGGCCCAGGGTGTAGGCACCCTTTCG 17264 Query 279711 GGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTA 279770 ||||||||||||||||| || | || |||| ||||| || | | ||||| || | Sbjct 17263 GGTGGTTGGAAGATGAAACTTGAACTTGCTCGTGCCATGCTGCAGAAGGCCGACATCTTG 17204 Query 279771 CTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTAC 279830 || ||||||||||| || |||||| |||| | ||||| |||||||| | | |||| Sbjct 17203 CTTCTTGATGAGCCGACGAACCACTTGGATGTTAAGAACGTCGCCTGGCTGGAGAACTAC 17144 Query 279831 CTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGAT 279890 || || || ||| ||| || | | |||| || || ||||||||||| ||||| || Sbjct 17143 CTGACGAGCCTGCCGAACGTGACGAGCATCATGGTGTCGCACGACTCTGGTTTCCTCGAC 17084 Query 279891 GCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCACATC 279947 | || || | |||||||||||| ||| | || |||||| ||| |||| Sbjct 17083 ACGGTCTGTACCAACATCATTCACTACGAGACTCGTAAGCTGAAGATCTACAAG------ 17030 Query 279948 GGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGAAG 280007 |||||||| ||||||||||||| || |||||||| |||||||| || ||| || Sbjct 17029 GGCAACCTTTCTGCTTTCGTGGAGCAGAAGCCTGAGGCCAAGGCCTACTACGAGCTGGAG 16970 Query 280008 GACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACATCAAA 280066 | || || |||| ||||| ||||| || || || | | |||| | | ||| Sbjct 16969 TCTGACAACGTGAAGTTCACGTTCCCGGAGCCTGGTTTCCTTGCTGACATCAAGAACAAG 16910 Query 280067 GGATCGCGCAATCA------TGAAGCTCCGTGGCGTCTCCTTTGCTT---ATCCCAATGG 280117 || || | |||| ||| | | || ||| | | | | | ||| | | Sbjct 16909 GGTAAGC-CCATCATTCGTTTGACGAACTGT-TCGTACCAGTACCCTGGCACCCCGAAGC 16852 Query 280118 C-CCCAACATCTTCA--GCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTGGTGT 280174 | | | || | || ||||| || || | ||| | || | || || | || Sbjct 16851 CGTCGATCAACAACATTTCAGTG---ACGTGC-GCTTTGT-CGAGC---CGTATCGCCGT 16800 Query 280175 CATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCA 280234 |||| ||||| ||||| |||||||||||| | ||||| | ||||| || ||| | Sbjct 16799 GCTTGGCCCCAACGGTGCCGGTAAGTCTACCATGATCAAGATGCTGACGGGTGAGGTTGA 16740 Query 280235 GGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 | |||| ||| || | || |||||||| || |||||| | || ||||| || || | Sbjct 16739 GCCCAC-GAGTGGCCAAGTGTGGAAGCACCCTTCCATGCGTTTCGCCTACGTGGCCCAAC 16681 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 |||||||||||||||||||| ||||| ||| ||| | ||||| ||||| ||||||| Sbjct 16680 ACGCTTTCCACCACATCGAGTCTCACCTCGACGAGACCGCCAACCAGTACATCCAGTGGC 16621 Query 280354 G 280354 | Sbjct 16620 G 16620 >seq8697 Length=2752 Score = 176 bits (194), Expect = 9e-39 Identities = 568/862 (66%), Gaps = 31/862 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||||| || ||||| | ||||| ||||||| ||||| | Sbjct 399 TCAAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCATCCAGTCGAACGGGTTCTTC 458 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | ||||| ||||| || || | ||| || | |||||| ||||| ||||| | Sbjct 459 ACGTTGTAGATCTTGGACGCACCCAGCGAGTAC-AACAGGCGGTCGGCCACGAACTCGAT 517 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCAT----ACGACAAGGAATTGCCTCAC 251737 || || | ||| || ||||||||||||| |||| ||| ||| | | ||||| Sbjct 518 GTATTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCACGGGGAGGGAATCACTCAC 577 Query 251738 AGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAG 251797 ||| || | || | | || || || ||| || || | ||| | | | Sbjct 578 ----GAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGTGCACGCGGCTCTCCG 633 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTC 251855 |||||||||| ||| ||| ||||||| ||| | ||| || | || ||||| ||||| Sbjct 634 GCAGCTTGTTCACCAACTTCGAGTACATGAGGCACGCGAAGTCCGT--GTGCATGCCCTC 691 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 ||| || ||||||| |||||| || | | ||| |||||||| | || || || |||| Sbjct 692 GTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTTTTGAG 751 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | ||| ||||| || ||||| | | ||||| || | | || | Sbjct 752 CCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCACGGCAGCGAACGCCAG 811 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGA----CA-AGAACTTCTGTGCCCATGCTGCC 252030 |||||||| | | ||| | | |||| || | |||| | ||||| ||| Sbjct 812 CAGGCGCTCCGGGTAGGAC--GACACGCGAGGGTCACACCACTTGAGCGCCCAGCGGGCC 869 Query 252031 TTCTT-TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC-GCTCGGCAT 252088 ||||| |||| | | ||||| || ||||| ||| | || | | ||| ||| | Sbjct 870 TTCTTCTCCACGCAC-GGGATCGTCTCGATGGCA-CGCAGCAGGTGATCCTTCTCCACGG 927 Query 252089 CGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGA 252148 |||||| |||| | || | ||| || ||||||| |||||| |||||| ||| | Sbjct 928 CGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGATAG 987 Query 252149 ACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGT 252208 |||||| | | ||||| || || || | || || || ||||| Sbjct 988 CGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACCTCATTGCTGAAGTTCA 1047 Query 252209 TTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGA 252268 | || | |||||| |||| ||||| |||||| | || ||||| | || | | ||||| Sbjct 1048 TCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAACGCCAGCACGTGCTTGA 1107 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||||||||||| | |||| | || || | |||||| | ||| || ||| Sbjct 1108 TGAAGTGACGCTCGTTGTCGGTCAG---GTTCCCCCAGTCCTTCAGGTCGTGCACCAGGT 1164 Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCA 252387 | || || |||||||||| | | | |||||||||||||||| ||| |||| || Sbjct 1165 CCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACATCTGC-CACACGTCG 1223 Query 252388 GGGTACTTGATTGGGAA-AGCA 252408 | | || ||| ||||| |||| Sbjct 1224 TGCTCCTGGATCGGGAACAGCA 1245 >seq8320 Length=26225 Score = 176 bits (194), Expect = 9e-39 Identities = 568/862 (66%), Gaps = 31/862 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||||| || ||||| | ||||| ||||||| ||||| | Sbjct 399 TCAAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCATCCAGTCGAACGGGTTCTTC 458 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | ||||| ||||| || || | ||| || | |||||| ||||| ||||| | Sbjct 459 ACGTTGTAGATCTTGGACGCACCCAGCGAGTAC-AACAGGCGGTCGGCCACGAACTCGAT 517 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCAT----ACGACAAGGAATTGCCTCAC 251737 || || | ||| || ||||||||||||| |||| ||| ||| | | ||||| Sbjct 518 GTATTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCACGGGGAGGGAATCACTCAC 577 Query 251738 AGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAG 251797 ||| || | || | | || || || ||| || || | ||| | | | Sbjct 578 ----GAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGTGCACGCGGCTCTCCG 633 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTC 251855 |||||||||| ||| ||| ||||||| ||| | ||| || | || ||||| ||||| Sbjct 634 GCAGCTTGTTCACCAACTTCGAGTACATGAGGCACGCGAAGTCCGT--GTGCATGCCCTC 691 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 ||| || ||||||| |||||| || | | ||| |||||||| | || || || |||| Sbjct 692 GTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTTTTGAG 751 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | ||| ||||| || ||||| | | ||||| || | | || | Sbjct 752 CCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCACGGCAGCGAACGCCAG 811 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGA----CA-AGAACTTCTGTGCCCATGCTGCC 252030 |||||||| | | ||| | | |||| || | |||| | ||||| ||| Sbjct 812 CAGGCGCTCCGGGTAGGAC--GACACGCGAGGGTCACACCACTTGAGCGCCCAGCGGGCC 869 Query 252031 TTCTT-TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC-GCTCGGCAT 252088 ||||| |||| | | ||||| || ||||| ||| | || | | ||| ||| | Sbjct 870 TTCTTCTCCACGCAC-GGGATCGTCTCGATGGCA-CGCAGCAGGTGATCCTTCTCCACGG 927 Query 252089 CGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGA 252148 |||||| |||| | || | ||| || ||||||| |||||| |||||| ||| | Sbjct 928 CGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGATAG 987 Query 252149 ACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGT 252208 |||||| | | ||||| || || || | || || || ||||| Sbjct 988 CGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACCTCATTGCTGAAGTTCA 1047 Query 252209 TTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGA 252268 | || | |||||| |||| ||||| |||||| | || ||||| | || | | ||||| Sbjct 1048 TCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAACGCCAGCACGTGCTTGA 1107 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||||||||||| | |||| | || || | |||||| | ||| || ||| Sbjct 1108 TGAAGTGACGCTCGTTGTCGGTCAG---GTTCCCCCAGTCCTTCAGGTCGTGCACCAGGT 1164 Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCA 252387 | || || |||||||||| | | | |||||||||||||||| ||| |||| || Sbjct 1165 CCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACATCTGC-CACACGTCG 1223 Query 252388 GGGTACTTGATTGGGAA-AGCA 252408 | | || ||| ||||| |||| Sbjct 1224 TGCTCCTGGATCGGGAACAGCA 1245 >seq3502 Length=35451 Score = 118 bits (130), Expect = 2e-21 Identities = 240/355 (68%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 218654 TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGC 218713 ||||||| || ||||| |||| ||||| || || |||| || |||||||| |||| Sbjct 11621 TTAAGGTGGCACAGTTGGCTGGCTATGTTTCGGAGCACTCTGCGTATCATCACGGAGAGC 11680 Query 218714 AGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGA 218773 ||||| |||| || ||| || ||||||||||| | || || ||||||||||| Sbjct 11681 AGAGTTTGCAAGGCTGCATCGTGAATATGGCACAGGATTTCGTTGGAAGTAACAACATCC 11740 Query 218774 ACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTT 218833 || ||||| || | ||||||||| ||| | ||||| |||| || |||||| ||| Sbjct 11741 ACCTGCTGTCGCCTATCGGTCAGTTCGGTACGCGTCTGATGGGCGGCAAGGATTCTGCCA 11800 Query 218834 CTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAAT---CAGG 218890 || | ||||| || || || ||| || | ||||| | | | | || | || Sbjct 11801 GCGCTCGTTATATTTTCACCAACTTGGAGCAGCTCACGCGGCTTATCTACGATCCGCTGG 11860 Query 218891 CCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGT 218950 | | || ||| || |||||| | || || || || || || |||||||| |||| Sbjct 11861 ACAACGACGTG---CTGAAGTATTTGGATGAAGACGGCCAGTCTATCGAGCCCGAATGGT 11917 Query 218951 ATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGG 219005 | | || || ||| | | ||||| || || |||||||||| ||||| Sbjct 11918 ACATCCCGATCATCCCGATGGTTCTCGTCAACGGCAGTGATGGTATCGGCACAGG 11972 >seq8986 Length=36306 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 21244 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 21185 Query 142563 CCCCAC 142568 |||||| Sbjct 21184 CCCCAC 21179 >seq6149 Length=26765 Score = 100 bits (110), Expect = 6e-16 Identities = 179/261 (69%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 294183 CCACTGGGCATCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACATTGCGTAAAA 294242 ||||| | ||| | |||||||||||||||||| ||||| |||||||| |||||||| Sbjct 21395 CCACTTGCCATTCGCCTCCACGCGCTTCATGAACAGATCGGGGACCCACAGAGCGTAAAA 21336 Query 294243 CAAGTTGCGGGCGCGCAGGCTCTCCTCACCTTGATTACGACGGAGGAGCAGGAAGTCCAT 294302 ||||| ||| ||||| | ||| | ||| ||||| ||| || |||||| || | Sbjct 21335 CAAGTCGCGCGCGCGGTGCAGCTCGTTACCGTGATTCTTACGCAGCTCCAGGAACTCGAA 21276 Query 294303 GATGTCGGGATGATGGGGTTCCAGATACACAGCAAAGGACCCCTT---CCTGCGTCCCCC 294359 | ||||| || || ||||| || | || || || || || | ||| ||| || Sbjct 21275 CACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGATCCTTTGCGCTTGCCTCCGCC 21216 Query 294360 CTGGTTGGCGTAGGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACGATGCCATCGGA 294419 ||||| | ||| || ||| || || ||| ||||||| || | ||| || | ||| Sbjct 21215 CTGGTCCACATAGCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGGATGATCCCGTTGGA 21156 Query 294420 CTCACCATTGGTTCCGCGAAT 294440 || || || ||||| || Sbjct 21155 TGATCCGTTCGTGCCGCGGAT 21135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027717763971799