Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq7165 109 5e-19 >seq7165 Length=36682 Score = 109 bits (120), Expect = 5e-19 Identities = 366/561 (65%), Gaps = 29/561 (5%) Strand=Plus/Minus Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGA 20335 ||||| ||||||||||| || || || | ||||| || |||| | ||| |||| |||| Sbjct 19959 TAGCTTGCAATGTTAAACGGCACACCAAGGCCCATATCGGCCGAGCGCTGGTACATCTGA 19900 Query 20336 CAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCC 20395 || || | || ||||| || || || || || || |||| |||||| ||||| || ||| Sbjct 19899 CACGACAATTCGCCGTCCGCCACGTAGAACTGGCAGAACATGTGACACGGCGGCAGTGCC 19840 Query 20396 ATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTA 20455 ||| || || || |||||||||||| ||| | ||| | | || ||| || Sbjct 19839 ATCTCATTCAGATCAGCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCATCGGGTTC 19780 Query 20456 TTTTTTA--TTA--AATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTC 20511 | | ||| |||| | ||| | ||||| | ||||| || || || || Sbjct 19779 GTACGCAGCTTATGAATCACCTCAGTA----AGCTGGTCCACTCCCTGTCCAGTGTAATC 19724 Query 20512 AGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCC 20571 || | | |||| |||| || ||||| || | ||||||||| ||||| || ||||| Sbjct 19723 TGCGTGCATGTCCGTGTACTTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACCGGTCC 19664 Query 20572 CAAATCCCCCTCCCTTCTGTGCG---CCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCC 20628 | ||| || |||| | ||| || || || | |||| |||||| ||| || Sbjct 19663 GAGATCACC--TACTTC-GCGCGTCTGCAATCCTCGGCTATCCAGATACTCCCGGGACCC 19607 Query 20629 ATTTTTGTCCCATATCTTGA-CTCCTGTTCTTGAA-----AGCTCCCTGGAGTCAGTACT 20682 ||| |||||| || | | |||| | || | || | || | ||| Sbjct 19606 ATTCCCGTCCCAGATGTGAATGTCCTTCTGCTGCAGCGTGTGCGCGCTCGTGTC------ 19553 Query 20683 CCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGT 20742 || | | |||||| |||||||| | | | ||||| ||||| ||||| ||||| || || Sbjct 19552 GCCGCTGATAAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGT 19493 Query 20743 TAGTA-AGGGA--AAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAG 20799 || | |||| | || || | |||||| | || |||| ||||| | || | Sbjct 19492 GAGCAGCGGGAACACGTTTTCTCTCAGACTGAAGCTCATCTGCGCTCCAAACACCGACAA 19433 Query 20800 GGTGCCTATGCCGGTGCGGTC 20820 ||||| |||| |||||||| Sbjct 19432 CGTGCCAGTGCCCGTGCGGTC 19412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441322930390760