Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6965 127 5e-24 seq9025 118 3e-21 seq5367 114 3e-20 seq2904 84.2 5e-11 >seq6965 Length=79392 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || | || || || || | || || || ||||| || |||||| Sbjct 54614 TCCACCGCGAAGACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 54555 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| ||||| || | || || || |||||||||| |||||| || | || Sbjct 54554 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGG 54495 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| || || ||||||||| |||||||| || || || || | || || Sbjct 54494 GATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCAC 54435 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| |||| ||||| || || |||||||| Sbjct 54434 GTCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 54387 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| ||||| || | || || || |||||| Sbjct 54349 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAG 54290 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||||| || | ||||| ||||| || || ||||||||| |||||||| Sbjct 54289 ATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTG 54230 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || | || || || ||||||||||||||||| |||| ||||| || Sbjct 54229 TCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACA 54170 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 54169 AAGATCTGCAT 54159 >seq9025 Length=46235 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || || || | ||| || || ||||| || |||| Sbjct 13019 CATG-CCACCGCGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGT 13077 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||| ||||| ||||| || | Sbjct 13078 CGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAG 13137 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || || || |||||| ||||| || || || || || || | Sbjct 13138 GCGGGATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCT 13197 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || | ||||||||||| || |||| |||||| ||||| |||||||| Sbjct 13198 CCACGTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 13249 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| ||||| || | || || || ||||| Sbjct 12831 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAA 12890 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || | ||||| ||||| || || || |||||| ||||| || Sbjct 12891 ATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTG 12950 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || || || | ||||||||||| || |||| |||||| ||| Sbjct 12951 TCGATCGAGTCCGACGGCTCCACGTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACG 13010 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 13011 AAGATCTGCAT 13021 >seq5367 Length=20193 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 7867 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 7926 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | ||||| ||||| || |||||||||||| || || || || Sbjct 7927 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 7986 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| | || || || |||||||| ||||| || ||||| ||||| || || Sbjct 7987 ATGCTGTCGGATGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAAG 8046 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 8047 ATCTGCATGAT 8057 >seq2904 Length=53647 Score = 84.2 bits (92), Expect = 5e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 325334 CTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAG 325393 || ||| |||||| || ||||||| | | ||||||||| || || |||| || Sbjct 41241 CTAGCGGCATCCTTGCCCCCCTGCAGACGGGTACCGAACTGACCTGAAGGGTACAAT-AG 41183 Query 325394 TTGATG-TTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA 325452 | || | || ||| ||| || | ||||| || | ||| || || ||| ||||| || Sbjct 41182 TGGAAGGTTGTTGGATCCCACGAAGTCCTGCGCCATGTTGACAATCGTCGAGTGCAGCGA 41123 Query 325453 TGCTTCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAACCGCTGAACTGTGCAACC 325510 |||||||||||||| || || |||||| ||||| ||| || | |||||| ||| Sbjct 41122 AGCTTCGCCATGGTGGTAAGCCGTATGCTCACTGCA--GTAGCCCGCCAGCTGTGCCACC 41065 Query 325511 TTCACGTCGGTCGTCAAATTGCGCTT 325536 || || ||| |||| | |||||||| Sbjct 41064 TTAACCTCGCTCGTTAGCTTGCGCTT 41039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179517781643442