Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq8569 140 7e-28 seq8697 95.1 3e-14 seq8320 95.1 3e-14 seq3502 89.7 1e-12 seq2904 89.7 1e-12 >seq8569 Length=27754 Score = 140 bits (154), Expect = 7e-28 Identities = 416/634 (66%), Gaps = 31/634 (5%) Strand=Plus/Plus Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 || || |||||| | || || || |||||||| |||||||||| | || ||||| Sbjct 17003 CTGCTCCACGAAAGCAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACG---AGTCTCGTA 17059 Query 333782 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 333841 || || || ||| || || | ||||||||| || |||||||| ||||| || | || Sbjct 17060 GTGAATGATGTTGGTACAGACCGTGTCGAGGAAACCAGAGTCGTGCGACACCATGATGCT 17119 Query 333842 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAG 333901 || |||| | ||| | ||||||| | |||||| ||||| ||| | Sbjct 17120 CGTCACGTTCGGCAGGCTCGTCAGGTAGTTCTCCAGCCAGGCGACGTTCTTAACATCCAA 17179 Query 333902 ATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 333961 ||||| |||||||| |||||||| | | | || ||| | ||||| ||||| ||||| Sbjct 17180 GTGGTTCGTCGGCTCATCAAGAAGCAAGATGTCGGCCTTCTGCAGCATGGCACGAGCAAG 17239 Query 333962 AGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAAT 334021 | |||||||| ||||| || || ||||| ||| | || ||| || || Sbjct 17240 TTCAAGTTTCATCTTCCAACCACCCGAAAGGGTGCCTA------CACCCTGGGCCTGCAT 17293 Query 334022 ATC-------AAAGCCAACCGATTCT-AGAGTAGTTACG-ATCTTTTCACGAGACCAAAT 334072 || ||| ||| || ||| ||||| || | | || ||||||| | | Sbjct 17294 CTCCGGGGTGAAACCCA--CGCTTCCGAGAGT-GTCCTGCACCTCGTCACGAGG---AGT 17347 Query 334073 GTTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGA 334132 ||| ||| | | ||||| |||||||| | | | || | || || || Sbjct 17348 GTT---CTTGAGGTCCTCATCCACCAGGATGAAGTCCACCACGGACAACTCAGCCTCCGA 17404 Query 334133 CCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAAC--ATCCGCAGAGGGGAACCCT 334190 | | || | ||| || ||| | |||| |||| | | | || | ||||| || Sbjct 17405 AGCCTGCAGGTTGTGCTCAACGAACACAGTCTTCAGCTCGGACCGGCTG--GGGAAGCCC 17462 Query 334191 TCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCA 334250 || ||||||||||| |||||||||||||| || || ||||| ||||| || || Sbjct 17463 TCGAGCTGACCGTTGGAGATAGCGCGCATCAGCGTCGACTTACCACAACCGTTGGGGCCG 17522 Query 334251 CACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTT 334310 ||||||||||| |||| ||||||||||| | || | |||||||| ||||| | Sbjct 17523 CACAGACCGTAACGGTGGCCACGCTTCAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATA 17582 Query 334311 CCACCATATGCCAGAGAAAATTCACAATCACACA 334344 |||||||| || || || || || || | |||| Sbjct 17583 CCACCATAGGCGAGCGAGAACTCGCAGTTGCACA 17616 Score = 100 bits (110), Expect = 6e-16 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| ||| || Sbjct 16595 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCGGTCTCGTCGAG 16654 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 ||| |||||||||||||||||| || || |||||||| || | |||||| || || Sbjct 16655 GTGAGACTCGATGTGGTGGAAAGCGTGTTGGGCCACGTAGGCGAAACGCATGGAAGGGTG 16714 Query 333434 CTTCCAAACACTT--CCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAAT 333484 ||||| |||||| || | |||| || | | ||||| |||| ||| || Sbjct 16715 CTTCC--ACACTTGGCCACTCGTGGGCTCAACCTCACCCGTCAGCATCTTGAT 16765 >seq8697 Length=2752 Score = 95.1 bits (104), Expect = 3e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || ||||||||||||| |||||| | || |||||||| ||||| ||||||||| | Sbjct 554 GCTGATCGGCATGAACTCTGCGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCT 495 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || | |||| ||| || | |||||| |||||||| || | || ||||| Sbjct 494 GTTGTACTCGCTGGGTGCGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGA 435 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||| || || || || |||||||| || ||||| || Sbjct 434 CATGATCTCGCTACAGGGCAAGACCAACTTCTTTGAGAAGCGCGT 390 >seq8320 Length=26225 Score = 95.1 bits (104), Expect = 3e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || ||||||||||||| |||||| | || |||||||| ||||| ||||||||| | Sbjct 554 GCTGATCGGCATGAACTCTGCGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCT 495 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || | |||| ||| || | |||||| |||||||| || | || ||||| Sbjct 494 GTTGTACTCGCTGGGTGCGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGA 435 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||| || || || || |||||||| || ||||| || Sbjct 434 CATGATCTCGCTACAGGGCAAGACCAACTTCTTTGAGAAGCGCGT 390 >seq3502 Length=35451 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 297434 TTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAAC 297493 || ||||||||||| || || || || |||||| || ||| || | || ||||||| Sbjct 11822 TTGGTGAAAATATAACGAGCGCTGGCAGAATCCTTGCCGCCCATCAGACGCGTACCGAAC 11763 Query 297494 TGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTC 297553 || || ||| ||| | || |||||| || ||||| || |||||||||| | ||| Sbjct 11762 TGACCGATAGGCGACAGCAGGTGGATGTTGTTACTTCCAACGAAATCCTGTGCCATATTC 11703 Query 297554 ACGATGGTCCCTTGCAGA-GATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTA 297612 |||||| ||||||| | ||| || || || ||||| || ||||| | ||| || Sbjct 11702 ACGATGCAGCCTTGCAAACTCTGC-TCTCCGTGATGATACGCAGAGTGCTCCGAAACATA 11644 Query 297613 ACCGCTGAACTGTGCAACCTT 297633 || |||||||| ||||| Sbjct 11643 GCCAGCCAACTGTGCCACCTT 11623 >seq2904 Length=53647 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 ||||| || || || | || ||| |||||| || ||||||| | | ||||||||| Sbjct 41259 GTGAAGATGTAACGAGGGCTAGCGGCATCCTTGCCCCCCTGCAGACGGGTACCGAACTGA 41200 Query 297497 CCCTCCGGCAACAACCAGTTGATG-TTATTGCTTCCGACATAATCCTGTGCAAGGTTCAC 297555 || || |||| ||| || | || ||| ||| || | ||||| || | ||| || Sbjct 41199 CCTGAAGGGTACAAT-AGTGGAAGGTTGTTGGATCCCACGAAGTCCTGCGCCATGTTGAC 41141 Query 297556 GATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAA 297613 || ||| ||||| || |||||||||||||| || || |||||| ||||| ||| Sbjct 41140 AATCGTCGAGTGCAGCGAAGCTTCGCCATGGTGGTAAGCCGTATGCTCACTGCA--GTAG 41083 Query 297614 CCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTT 297657 || | |||||| ||||| || ||| |||| | |||||||| Sbjct 41082 CCCGCCAGCTGTGCCACCTTAACCTCGCTCGTTAGCTTGCGCTT 41039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102752273054650