Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6149 251 9e-62 seq8697 150 2e-31 seq8320 150 2e-31 seq2904 96.9 4e-15 >seq6149 Length=26765 Score = 251 bits (278), Expect = 9e-62 Identities = 1119/1749 (64%), Gaps = 66/1749 (4%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| |||||||||||||||| ||||||||| || | ||||| || | |||||| Sbjct 22565 GTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAACTT 22506 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 || || || | ||| | ||||| ||| || ||| || || Sbjct 22505 ACTGATCGTCGGGTCGGCAATGTGAATGTTCAACGACTGGCTCTGGCAAATGTAGGCGCC 22446 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 ||| ||||||| || || | ||| ||||| ||||||||||||||| || |||| Sbjct 22445 ACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATTTCCCACACTGTCTTGTACTT 22386 Query 113782 GTTCTTAATATCATCTGGGATA---TCCACGATATTTTGGATGGAGCCACCCGCCTTGAC 113838 | ||| | | || || || | ||| || || | ||||||||| | | Sbjct 22385 CTCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAG---C 22332 Query 113839 CATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG 113895 || || | || || || | ||||| || | || | || || | || ||| Sbjct 22331 CAGGATCTGGTTGCGCACCTCAGGCGTCCAGATTCCCAGCTCGATCAGCTCTTTCATGAG 22272 Query 113896 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 113955 | ||| || || | |||||||| || || ||| | || || || | ||| Sbjct 22271 GTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGT 22212 Query 113956 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGG 114015 || ||||| | | |||| ||||| ||||| || || || || || || |||||||| || Sbjct 22211 ATACGGCTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGG 22152 Query 114016 TGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCA 114075 |||| ||| || ||| || | || | | | | | |||||||| || ||| Sbjct 22151 AGCCACGAGGAGCGAGTTGCGTATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGTCCA 22092 Query 114076 GTCGTA-------GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 114128 ||| | | || | ||| | ||| ||||| || ||||||| |||||| | Sbjct 22091 GTCCCACAAACCGGAAGA-CGGGGTCACGCCC---CACATGTCGAACTGGAAGATACCCT 22036 Query 114129 GGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGC 114188 | ||| ||||| |||| || |||||||| |||||| ||| || | || Sbjct 22035 TGCTGGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTCCATCG 21976 Query 114189 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT--TGCCTT--- 114243 || ||| | | |||| || || ||||| || ||| ||||| || || Sbjct 21975 ACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATG------TTCATGTTGAGTTCAC 21922 Query 114244 GGCCTCGTCGGAA-TCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTG 114300 || || | || || ||||| ||| || | |||||| ||||||||||||| || Sbjct 21921 GGGCTTGCGGGCTCTCGAACGCATAGTT--CATGAGGATAAATGCATCCGCGAGACCCTG 21864 Query 114301 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATA 114360 |||||| | |||| ||||| || | ||| || ||||| || || ||| ||||| || Sbjct 21863 GACACCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGTGCCTCCTCGACGGGGTA 21804 Query 114361 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 114420 | || ||| || ||| |||| | || ||| || ||||| || | || | || Sbjct 21803 GTAGTTGACATCAATGACCTTATTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAG 21744 Query 114421 CTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 114480 ||| | ||| | || | || | || | ||| |||| || ||||| | ||||| Sbjct 21743 CTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACAAACTTGGGGAGGGCCACAGACGC 21690 Query 114481 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 114540 ||| || ||||| | |||||| |||||||| ||||| || ||||| || Sbjct 21689 CAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAGTT 21630 Query 114541 ---TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597 ||| | || ||||| | ||||| || || ||||| ||| ||| ||||| Sbjct 21629 GCTTGAGCGG---ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTT 21573 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATC 114657 ||| |||||| | ||| || ||||| | || | | || || || ||| || | Sbjct 21572 GTACAGCATGAACGGCACGCCTGTCTCAATCTGCGCGTCCAGGATGGCGAACCA--CAGC 21515 Query 114658 GGCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 114713 || | ||| | | | ||| || || ||||||| ||||||||| ||| || | Sbjct 21514 TGCTG--GGCGTTGATCGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTCTCGTACAGCG 21457 Query 114714 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAG 114773 || ||||| || ||| | ||| |||| || || |||| | |||||||| || Sbjct 21456 TCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCGTTGGGGCAGAACAGGC 21397 Query 114774 ACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGA 114833 ||| | ||| | |||| || ||||||||||| || || |||| ||| ||||| | | Sbjct 21396 TCCACTTGCCATTCGCCTCCACGCGCTTCATGAACAGATCGGGGACCCACAGAGCGTAAA 21337 Query 114834 AGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 114892 | | || || || | || | || | || ||||| ||||| ||||| || || Sbjct 21336 ACAAGTCGCGCGCGCGGTGCAGC-TCGTTACCGTGATTCTTACGCAGCTCCAGGAACTCG 21278 Query 114893 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCA 114949 | | || ||||||||||| |||||||| | |||| || || || || | || Sbjct 21277 AACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGATCCTTTGCGCTTGCCTCCG 21218 Query 114950 GCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCA 115009 |||||| ||||| | || ||| | || || || | ||||| || ||||| || | Sbjct 21217 CCCTGGTCCACATAGCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGGATGATCCCGTTG 21158 Query 115010 GATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATA 115069 ||| || || || || || || || |||| | || | || || || Sbjct 21157 GATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTAATG 21098 Query 115070 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCG 115129 |||||||| || |||||||| ||||| |||||||| | |||| || |||| || || Sbjct 21097 CCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCC 21038 Query 115130 TCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 115189 || |||||||| ||| | || | |||||||| ||||| || || | || || Sbjct 21037 TCAATCGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGTG 20978 Query 115190 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTA 115248 || ||||| ||||| || || |||||||| | || | || | || ||||| ||||| Sbjct 20977 CCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGCTCGTA 20919 Query 115249 GGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 115308 || | || | || | ||||||| | ||| ||||| | || || ||||| | ||| Sbjct 20918 CGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGGATACCCAGCGCCACGCGCATGATCAT 20859 Query 115309 GTATTGGGG 115317 | ||||| Sbjct 20858 CTGCTGGGG 20850 >seq8697 Length=2752 Score = 150 bits (166), Expect = 2e-31 Identities = 361/539 (67%), Gaps = 13/539 (2%) Strand=Plus/Plus Query 125748 CCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||| ||| ||| || || || |||||||| |||||||| ||||| || | | | Sbjct 369 CCAGCCTTGGAGTACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGTAGCGAG 428 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 125866 || | ||||| | || || |||||||| ||| | || | | | | || | | Sbjct 429 ATCATGTCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACGCACCCAGCGAG 488 Query 125867 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 125926 | | || || || | ||| |||| ||||| | |||| | |||||||||| ||| Sbjct 489 TACAACAGGCGGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCAGAGTTCATGCCG 548 Query 125927 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGC 125986 || || | ||||| | || | |||| | | |||||| |||| || || ||| Sbjct 549 ATCAGCTCCACGGGGAGGGAATCACTCACGAACTCGTGCTCAATCACCACAGCGTCACGC 608 Query 125987 ACGATGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCA 126044 ||||| ||||| | | | | || ||| | | || ||| || | | | | || Sbjct 609 ACGATCGCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAACTTCGAGTACATGAGGCA 667 Query 126045 CGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 || | || || ||| | |||||||| ||| |||||| || |||||||||| ||| | Sbjct 668 CG-CGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGAC 726 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | |||||||| || ||||| || | |||||| || | || || || ||||||||||| | Sbjct 727 CAGGCATGAGGCCGCGCTTTTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAA 786 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA----GCGCGACTTTGTG 126220 | |||||||| |||||||| | || ||||| | |||| ||||| | | Sbjct 787 TGCCCTCCACGGCAGCGAACGCCAGCAGGCGCTCCGGGTAGGACGACACGCGA----GGG 842 Query 126221 TCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||| ||||||| | |||||| | ||||| ||||| | ||||||| |||| ||| || Sbjct 843 TCACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 901 >seq8320 Length=26225 Score = 150 bits (166), Expect = 2e-31 Identities = 361/539 (67%), Gaps = 13/539 (2%) Strand=Plus/Plus Query 125748 CCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||| ||| ||| || || || |||||||| |||||||| ||||| || | | | Sbjct 369 CCAGCCTTGGAGTACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGTAGCGAG 428 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 125866 || | ||||| | || || |||||||| ||| | || | | | | || | | Sbjct 429 ATCATGTCCATCCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACGCACCCAGCGAG 488 Query 125867 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 125926 | | || || || | ||| |||| ||||| | |||| | |||||||||| ||| Sbjct 489 TACAACAGGCGGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCAGAGTTCATGCCG 548 Query 125927 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGC 125986 || || | ||||| | || | |||| | | |||||| |||| || || ||| Sbjct 549 ATCAGCTCCACGGGGAGGGAATCACTCACGAACTCGTGCTCAATCACCACAGCGTCACGC 608 Query 125987 ACGATGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCA 126044 ||||| ||||| | | | | || ||| | | || ||| || | | | | || Sbjct 609 ACGATCGCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAACTTCGAGTACATGAGGCA 667 Query 126045 CGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 || | || || ||| | |||||||| ||| |||||| || |||||||||| ||| | Sbjct 668 CG-CGAAGTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGAC 726 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | |||||||| || ||||| || | |||||| || | || || || ||||||||||| | Sbjct 727 CAGGCATGAGGCCGCGCTTTTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAA 786 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA----GCGCGACTTTGTG 126220 | |||||||| |||||||| | || ||||| | |||| ||||| | | Sbjct 787 TGCCCTCCACGGCAGCGAACGCCAGCAGGCGCTCCGGGTAGGACGACACGCGA----GGG 842 Query 126221 TCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||| ||||||| | |||||| | ||||| ||||| | ||||||| |||| ||| || Sbjct 843 TCACACCACTTGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 901 >seq2904 Length=53647 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 172763 AGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 172822 || ||| |||| | ||||| || ||||| | || || ||||| || ||||||||| Sbjct 40335 AGCTGCACCACAGTCGCATCACGCACATTCAGAAGTTTGCCGCGGAGGGGAAACACACCG 40276 Query 172823 TAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 172882 ||||||||||| |||||||| | |||||||| || || || | ||| || |||||||| Sbjct 40275 TAGTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCT 40216 Query 172883 TCCGTCACGATGAGCG 172898 || |||| || |||| Sbjct 40215 TCAGTCAAAATTAGCG 40200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597286106510120