Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq6149 311 9e-80 >seq6149 Length=26765 Score = 311 bits (344), Expect = 9e-80 Identities = 1201/1872 (64%), Gaps = 57/1872 (3%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| ||||| | ||||||||| || ||| | |||||| || || | |||| | Sbjct 20778 TACGACTACTTCGGCTTCAAAACGCTCGAGCGGGGCTACCTCTTCCGCGTGAACGGCAAG 20837 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||| || || ||| || | |||||||| || | || || ||| || ||| Sbjct 20838 GTCGTGGAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTATCCACAAGCAAGAC 20897 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGA-CATGCGGGACAAGAGGTATACCATGGCCAC 93896 || | | | ||| | | | ||| |||| | | | | ||| || || Sbjct 20898 ATCCAGGCGGCACTGCACACGTAC-GAGCTCATGTCACAGATGTTCTTTACGCACGCGAC 20956 Query 93897 CCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGAC 93956 || || || || ||||| || || ||| || ||| |||| ||||| |||||| || | Sbjct 20957 GCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTGGC 21016 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | ||| |||||| || || |||| ||||| |||||| | || ||| |||||| Sbjct 21017 CATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGCATCTC 21076 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACAT 94076 || | || || || || || || ||| | ||| || | || |||| | |||||| Sbjct 21077 CAAGTGGGCCGGAGGTATTGGCATTAGTATGCACAACATCCGCGCCACGAACAGCTACAT 21136 Query 94077 CCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGC 94136 |||||| || || || | |||||||| || |||| ||||| ||||||||||| || | Sbjct 21137 CCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAACGACAC 21196 Query 94137 GGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGA 94196 ||| ||||| ||||||||||| || || | | | || || || ||||| |||| || || Sbjct 21197 GGCTCGCTATGTGGACCAGGGCGGAGGCAAGCGCAAAGGATCGTTCGCCATCTACCTGGA 21256 Query 94197 GCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCT 94256 ||| |||||||| |||||| | ||| | || ||||| ||||| ||||| ||||| || Sbjct 21257 GCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGTAAGAATCACGGTAACGAGCT 21316 Query 94257 GGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGT 94316 | | | || | ||| | || |||||||| ||||| || || || || ||||| ||||| Sbjct 21317 GCACCGCGCGCGCGACTTGTTTTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGCGT 21376 Query 94317 CGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGT 94376 ||| || | ||||| || || || ||||| || |||||||| | ||| Sbjct 21377 GGAGGCGAATGGCAAGTGGAGCCTGTTCTGCCCCAACGAGGCCCCCGGACTCTACGA--G 21434 Query 94377 TTGTGGATCG-CGTTTTGAAGAC-TTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGG 94434 | ||| || || || |||| |||| | ||||| | |||| || | Sbjct 21435 TGCTGGGGCGACGAGTTCGAGACGCTGTACGAGAAGTACGAGAAGGAGGGACGCGCGCGC 21494 Query 94435 AAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGT 94494 ||| || | || | |||||||| ||| |||||| ||| | ||||| || Sbjct 21495 AAGACGATCAACGCCCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATTGAGACAGGC 21554 Query 94495 ACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGG 94554 ||| | ||| ||| ||||||| | | |||| |||||| ||||||||| ||||||| Sbjct 21555 GTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTCGGC 21614 Query 94555 GTGATCAAGAGCTC---GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 |||| |||| || ||||| ||||||| | ||||| || || || || ||| Sbjct 21615 ACGATC---CGCTCAAGCAACTTGTGCTGCGAGATTATGGAGTACACGTCGCCCGATGAG 21671 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671 | || ||||| ||||||| || | ||| ||| || ||| |||| | Sbjct 21672 GTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGAGGATG--GAGTGT 21729 Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT---CTTG 94728 || ||| | | ||| | ||| |||| | |||| |||| | | Sbjct 21730 TCAACTAC----CAGAAGCTGTACGAG---GTGACC--------AAGG-TGGTGACCCGG 21773 Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 ||| |||| | ||| || || |||| |||||||||| |||||| || || ||| Sbjct 21774 AACTTGAATAAGGTCATTGATGTCAACTACTACCCCGTCGAGGAGGCACGCAAGTCCAAC 21833 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 || || || || | || || || ||||||||| ||||||| || | | | ||| Sbjct 21834 ATGCGCCACCGCCCGGTTGGTATTGGTGTCCAGGGTCTCGCGGATGCATTTATCCTCATG 21893 Query 94849 -CGTCTGCCCTACGACTCTGTCGACGC-GGCGGGT---TTGAATTTGAACATATTCGAAA 94903 | || | | ||| | ||| || || | || ||||||| ||||| | Sbjct 21894 AACTATG-CGTTCGA----GAGCCCGCAAGCCCGTGAACTCAACATGAACATCTTCGAGA 21948 Query 94904 GCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC 94963 || || |||| | ||| | || | | | |||| ||| || || Sbjct 21949 CGATCTACTACGCTTCTATGGAGACGTCGATGGAGATCGCCA---AGGAGCTGGGCCCGT 22005 Query 94964 ACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCTGGGGT 95022 |||| |||||| || ||| ||| | | |||| || || ||||||||| | ||||| Sbjct 22006 ACGAGACGTTCCAGGGCTCG-CCTGCCAGCAAGGGTATCTTCCAGTTCGACATGTGGGGC 22064 Query 95023 GTGA---AGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACAC 95079 |||| | | || ||| ||| |||||| || || | | || ||||| ||| Sbjct 22065 GTGACCCCGTCTTCCGGTTTGTGGGACTGGACTGCGCTCAAGGAGAACGTGATCAAGCAC 22124 Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139 || | ||| |||| || ||||| || |||||||| || || ||||| ||||| | Sbjct 22125 GGCATACGCAACTCGCTCCTCGTGGCTCCGATGCCCACTGCGTCGACGGCTCAGATTTTG 22184 Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCC 95199 |||||||||||||| |||| || | || || ||| |||||||| | || ||||| || Sbjct 22185 GGCAACAACGAGTCCATCGAGCCGTATACGTCGAACATGTACAACCGCCGCGTGCTGGCT 22244 Query 95200 GGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGG 95259 || || ||| | || | |||||| ||||| | || |||| ||||| | ||| Sbjct 22245 GGTGAGTTCACGATCGTGAACAAGTACCTCATGAAAGAGCTGATCGAGCTGGGAATCTGG 22304 Query 95260 GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAA 95319 |||| ||||| | || | | |||||||| ||||| | | || Sbjct 22305 ACGCCTGAGGTGCGCAACCAGATCCTGGCTGACGGTGGCTCCGTGCAGAAGGT---GAAA 22361 Query 95320 ---ATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTG 95376 || ||||| | |||||| | |||||||| |||||||| ||| |||| | Sbjct 22362 TCCATTCCGGACCAGGTCAAGGAGAAGTACAAGACAGTGTGGGAAATCAAGCAGAAGGCC 22421 Query 95377 ATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNN 95436 | | |||| |||| | ||| || ||| ||| |||||||| Sbjct 22422 GTGTTGGACCTGTCGGCGGACCGTGGCGCCTACATTTGCCAGAGCCAGTCGTTGAACATT 22481 Query 95437 NNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAG 95496 || ||||| || | | | || | ||||||||| ||||||| |||| ||| Sbjct 22482 CACATTGCCGACCCGACGATCAGTAAGTTGACGTCCATGCACTTCTACGCCTGGAAGAAG 22541 Query 95497 GGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTC 95556 || |||||||| || ||||| || |||| | || || || ||| |||| |||||| Sbjct 22542 GGGCTCAAGACGGGCATGTACTACATGCGCGGACGTCCGAAAGCCGACGCCATCCAGTTC 22601 Query 95557 GCCCTAGAAAAG 95568 || | || ||| Sbjct 22602 ACCGTGGACAAG 22613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494667302462440