Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6965 150 2e-31 seq9025 134 1e-26 seq6149 104 2e-17 seq5367 98.7 9e-16 seq8697 84.2 2e-11 seq8320 84.2 2e-11 >seq6965 Length=79392 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | |||| ||||| || | |||||||| || || || ||||| |||| Sbjct 54614 TCCACCGCGAAGACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 54555 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || || ||| ||||||| |||||||| || ||||| Sbjct 54554 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGG 54495 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| |||||||| |||||||||||| | |||| |||| | ||||| | ||| | Sbjct 54494 GATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATCGAGTCCGAAGGCTCCA 54436 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | ||| || || |||| || || ||||| ||||||||| Sbjct 54435 CGTCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 54386 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | |||||||| || || || ||||| |||| | Sbjct 54385 CCACCACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 54326 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || ||| ||||||| |||||||| || ||||| Sbjct 54325 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGG 54266 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| |||||||||||| | |||| |||| | ||||| | ||| || Sbjct 54265 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTG-TCGATCGAGTCCGAAGGCTCCAC 54207 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| || || |||| || || ||||| ||||||||| Sbjct 54206 GTCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 54158 >seq9025 Length=46235 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| |||| ||| ||||| || || || ||||| |||| | Sbjct 13023 CCACCGCGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 13082 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || |||||| | |||| |||||||| || || || Sbjct 13083 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 13142 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| |||||||| ||||||||||| | | |||| | ||||| ||| || Sbjct 13143 ATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACG 13202 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||| |||| ||| || || || |||||||| Sbjct 13203 TCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 13249 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || |||| |||| ||||| |||| ||| ||||| || || || ||||| |||| | Sbjct 12795 CCGCCACGTAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 12854 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || |||||| | |||| |||||||| || || || Sbjct 12855 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 12914 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| |||||||| ||||||||||| | | |||| | ||||| ||| || Sbjct 12915 ATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACG 12974 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||| |||| ||| || || || ||||||||| Sbjct 12975 TCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 13022 >seq6149 Length=26765 Score = 104 bits (114), Expect = 2e-17 Identities = 321/492 (65%), Gaps = 6/492 (1%) Strand=Plus/Minus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 ||| ||||||||||| | || | || ||| | ||||| ||||||||||| || Sbjct 22610 GTCCACGGTGAACTGGATGGCGTCGGCTTTCGGACGTCCGCGCATGTAGTACATGCCCGT 22551 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA--TGACCGAGTACGTGGGT 145836 ||||||| |||| ||| | ||| ||||| ||| || || | || || ||| || Sbjct 22550 CTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAACTTACTGAT--CGTCGGG 22493 Query 145837 TCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCC-CGGTCGGCGGC 145895 ||||| | | || | || |||||||| |||| | || ||| ||||| || | Sbjct 22492 TCGGCAATGTGAATGTTCAACGACTGGCTCTGGCAAATGTA-GGCGCCACGGTCCGCCGA 22434 Query 145896 CATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTG 145955 || ||| | || | ||| || |||||||| | || || | |||||||| || Sbjct 22433 CAGGTCCAACACGGCCTTCTGCTTGATTTCCCACACTGTCTTGTACTTCTCCTTGACCTG 22374 Query 145956 CTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAA 146015 | || || | | |||||||| || ||| || |||| || | |||||||| Sbjct 22373 GTCCGGAATGGATTTCACCTTCTGCACGGAGCCACCGTCAGCCAGGATCTGGTTGCGCAC 22314 Query 146016 TTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTG 146075 || || || | || || || | || | || ||||| |||| ||| || | | Sbjct 22313 CTCAGGCGTCCAGATTCCCAGCTCGATCAGCTCTTTCATGAGGTACTTGTTCACGATCGT 22254 Query 146076 AAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTC 146135 ||||| || || || ||||| | |||| ||| || ||||||||| ||||| Sbjct 22253 GAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTATACGGCTCGATGGACTC 22194 Query 146136 GTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTT 146195 |||||| || | ||||| ||||||| || || ||||| ||||| || | ||||| Sbjct 22193 GTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTT 22134 Query 146196 TCTCACGCCGTG 146207 | | |||||| Sbjct 22133 GCGTATGCCGTG 22122 >seq5367 Length=20193 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || |||||| ||||| Sbjct 7867 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 7926 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||| ||||||||| |||||||||||||| | || Sbjct 7927 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 7986 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || || || ||||| || || ||||| Sbjct 7987 ATGCTGTCGGATGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAAG 8046 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 8047 ATCTGCATG 8055 >seq8697 Length=2752 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| | | | | ||| | | |||||||| || || |||||||||||| | || Sbjct 547 GGCATGAACTCTGCGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGTT-GTA 489 Query 47472 CA-GCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530 | ||| ||||||| ||| || |||| || ||||| | ||| ||| || Sbjct 488 CTCGCTGGGTGCGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGAT 429 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||| |||||||||||||||| || ||||||||||| ||||| || Sbjct 428 CTCGCTACAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTA 381 >seq8320 Length=26225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| | | | | ||| | | |||||||| || || |||||||||||| | || Sbjct 547 GGCATGAACTCTGCGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGTT-GTA 489 Query 47472 CA-GCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530 | ||| ||||||| ||| || |||| || ||||| | ||| ||| || Sbjct 488 CTCGCTGGGTGCGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGAT 429 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||| |||||||||||||||| || ||||||||||| ||||| || Sbjct 428 CTCGCTACAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTA 381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475447074353360