Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq9025 105 6e-18 seq6149 86.0 6e-12 >seq9025 Length=46235 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | || ||| || || |||||||| ||||| ||||| || || ||| Sbjct 13020 ATGCCACCGCGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCG 13079 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || | || || | || || || ||| | |||| || |||||||| ||| Sbjct 13080 CTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGC 13139 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || ||||||||||| || || | || | | ||| || | ||| Sbjct 13140 GGGATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCC 13199 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || | ||| | ||| ||||| || | ||| || || || || |||||| Sbjct 13200 ACGTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATC 13250 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || ||| || || |||||||| ||||| ||||| || || ||||| Sbjct 12795 CCGCCACGTAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 12854 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | || || | || || || ||| | |||| || |||||||| ||||| Sbjct 12855 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 12914 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || ||||||||||| || || | || | | ||| || | ||| || Sbjct 12915 ATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACG 12974 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||| | ||| ||||| || | ||| || || || || ||||| Sbjct 12975 TCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 13021 >seq6149 Length=26765 Score = 86.0 bits (94), Expect = 6e-12 Identities = 293/451 (65%), Gaps = 7/451 (2%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||||| || || || || ||| |||||||||| || | || | ||| | Sbjct 20835 AAGGTCGTGGAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTATCCACAAGCAA 20894 Query 122958 GACATCGAAAACGCGACCGAA-ACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGC 123016 |||||| | || || | | || ||||| | ||||| || | || || |||||||| Sbjct 20895 GACATCCAGGCGGC-ACTGCACACGTACGAGCTCATGTCACAGATGTTCTTTACGCACGC 20953 Query 123017 GAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCT 123076 || ||||| | || |||||||||| | || ||| |||| ||||| || |||| Sbjct 20954 GACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCT 21013 Query 123077 CACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGAT 123136 || ||| || ||| || || || || || || | | ||||||| || Sbjct 21014 GGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGCAT 21073 Query 123137 TTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGA-AGCC 123195 ||||| | | ||| || || ||| | | ||||| || | | | || || | ||| Sbjct 21074 CTCCAAGTGGGCCGGAGGTATTGGCATTAGTATGCACAACATCCGCG-CCACGAACAGCT 21132 Query 123196 GCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATA 123255 |||| | |||| ||||| || |||| || |||||||| | || | ||| Sbjct 21133 ACATCCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAACG 21192 Query 123256 ACGCCGTGCGGCACGTCGACCAGGGC---GGCAAACGCAAAGGCGCGATGGCGATCTATC 123312 || | | || | || ||||||||| ||||| |||||||| || | || ||||| | Sbjct 21193 ACACGGCTCGCTATGTGGACCAGGGCGGAGGCAAGCGCAAAGGATCGTTCGCCATCTACC 21252 Query 123313 TAGAACCGTGGCACGTTGATGTGTACGATTT 123343 | || |||||||||| || |||| ||| || Sbjct 21253 TGGAGCCGTGGCACGCCGACGTGTTCGAGTT 21283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451952129288440