Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6149 239 6e-58 seq2904 96.9 4e-15 >seq6149 Length=26765 Score = 239 bits (264), Expect = 6e-58 Identities = 1117/1749 (64%), Gaps = 66/1749 (4%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| |||||||||||||||| ||||||||| || | ||||| || | |||||| Sbjct 22565 GTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAACTT 22506 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 || || || | ||| | ||||| ||| || ||| || || Sbjct 22505 ACTGATCGTCGGGTCGGCAATGTGAATGTTCAACGACTGGCTCTGGCAAATGTAGGCGCC 22446 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 || ||||||| || || | ||| ||||| ||||||||||||||| || |||| Sbjct 22445 ACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATTTCCCACACTGTCTTGTACTT 22386 Query 115743 GTTCTTAATATCATCTGGGATA---TCCACGATATTTTGGATAGAGCCACCTGCCTTGAC 115799 | ||| | | || || || | ||| || || | |||||||| | | Sbjct 22385 CTCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAG---C 22332 Query 115800 CATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAG 115856 || || | || || || | ||||| || | || | || || | || ||| Sbjct 22331 CAGGATCTGGTTGCGCACCTCAGGCGTCCAGATTCCCAGCTCGATCAGCTCTTTCATGAG 22272 Query 115857 GTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGT 115916 || ||| || || | |||||||| || || ||| | || ||||| | ||| Sbjct 22271 GTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGT 22212 Query 115917 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGG 115976 || ||||| | | |||| ||||| ||||| || || || || || || |||||||| || Sbjct 22211 ATACGGCTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGG 22152 Query 115977 TGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCA 116036 |||| ||| || |||||| | || | | | | |||||||| || ||| Sbjct 22151 AGCCACGAGGAGCGAGTTGCGTATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGTCCA 22092 Query 116037 GTCGTA-------GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTT 116089 ||| | | || | ||| | ||| ||||| || ||||||| |||||| | Sbjct 22091 GTCCCACAAACCGGAAGA-CGGGGTCACGCCC---CACATGTCGAACTGGAAGATACCCT 22036 Query 116090 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGC 116149 | || ||||| |||| || ||||| || |||||| ||| || | || Sbjct 22035 TGCTGGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTCCATCG 21976 Query 116150 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT--TGCCTT--- 116204 || ||| | | |||| || || ||||| || ||| ||||| || || Sbjct 21975 ACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATG------TTCATGTTGAGTTCAC 21922 Query 116205 GGCCTCGTCGGAA-TCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCTTGG 116262 || || | || || ||||| | | || | |||||| ||||||||||||| ||| Sbjct 21921 GGGCTTGCGGGCTCTCGAACGC-ATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGG 21863 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAA 116322 ||||| | |||| ||||| || | ||| || ||||| || || ||| ||||| || Sbjct 21862 ACACCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGTGCCTCCTCGACGGGGTAG 21803 Query 116323 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 116382 | || ||| || ||| |||| | || ||| || ||||| || | || | ||| Sbjct 21802 TAGTTGACATCAATGACCTTATTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGC 21743 Query 116383 TTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCC 116442 || | ||| | || | || | || | ||| |||| || ||||| | |||||| Sbjct 21742 TTCTGGTAGTTGAAC-----ACTC-CATCCTCCACAAACTTGGGGAGGGCCACAGACGCC 21689 Query 116443 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT- 116501 || || ||||| | |||||| |||||||| ||||| || ||||| || Sbjct 21688 AGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAGTTG 21629 Query 116502 --TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 ||| | || ||||| | ||||| || || ||||| ||| ||| |||||| Sbjct 21628 CTTGAGCGG---ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTG 21572 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCG 116619 || ||||| | ||| || ||||| | || | | || || || ||| || | Sbjct 21571 TACAGCATGAACGGCACGCCTGTCTCAATCTGCGCGTCCAGGATGGCGAACCA--CAGCT 21514 Query 116620 GCGGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 116675 || | ||| | | | ||| || || ||||||| ||||||||| ||| || | Sbjct 21513 GCTG--GGCGTTGATCGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTCTCGTACAGCGT 21456 Query 116676 CTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAG 116734 ||| ||||| || ||| |||| ||| |||| || || |||| | || ||||| || Sbjct 21455 CTCGAACTCGTCGCCC-CAGCACTCGTAGAGTCCGGGGGCCTCGTTGGGGCAGAACAGGC 21397 Query 116735 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 116794 ||| | ||| | |||| || ||||||||||| || || |||| ||| || || | | Sbjct 21396 TCCACTTGCCATTCGCCTCCACGCGCTTCATGAACAGATCGGGGACCCACAGAGCGTAAA 21337 Query 116795 AGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 116853 | | || || || | || | || | || ||||| ||||| ||||| || || Sbjct 21336 ACAAGTCGCGCGCGCGGTGCAGC-TCGTTACCGTGATTCTTACGCAGCTCCAGGAACTCG 21278 Query 116854 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCA 116910 | | || ||||||||||| |||||||| | |||| || || ||||| | || Sbjct 21277 AACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGATCCTTTGCGCTTGCCTCCG 21218 Query 116911 GCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCA 116970 |||||| ||||| | ||||| |||| || || | ||||| || ||||| || | Sbjct 21217 CCCTGGTCCACATAGCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGGATGATCCCGTTG 21158 Query 116971 GATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATA 117030 ||| || || || || || || || |||| | || | ||| || || Sbjct 21157 GATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTAATG 21098 Query 117031 CCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCA 117090 |||||||| || |||||||| ||||| ||||||| | |||| || |||| || || Sbjct 21097 CCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCC 21038 Query 117091 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 117150 || |||||||| ||| | || | |||||||| ||||| || || | || || Sbjct 21037 TCAATCGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGTG 20978 Query 117151 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTA 117209 || ||||| ||||| || || |||||||| | || | || | || ||||| ||||| Sbjct 20977 CCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGCTCGTA 20919 Query 117210 GGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACAT 117269 || | || | | | ||||||| | ||| ||||| | | || ||||| | ||| Sbjct 20918 CGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGGATACCCAGCGCCACGCGCATGATCAT 20859 Query 117270 GTATTGGGG 117278 | ||||| Sbjct 20858 CTGCTGGGG 20850 >seq2904 Length=53647 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 176783 AGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCG 176842 || ||| |||| | || || || ||||| | || |||||||| || ||||||||| Sbjct 40335 AGCTGCACCACAGTCGCATCACGCACATTCAGAAGTTTGCCGCGGAGGGGAAACACACCG 40276 Query 176843 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 176902 ||||||||||| |||||||| | |||||||| || || || | ||| || |||||||| Sbjct 40275 TAGTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCT 40216 Query 176903 TCCGTCACGATGAGCG 176918 || |||| || |||| Sbjct 40215 TCAGTCAAAATTAGCG 40200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613437881355240