Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6149 174 2e-38 seq8697 163 5e-35 seq8320 163 5e-35 >seq6149 Length=26765 Score = 174 bits (192), Expect = 2e-38 Identities = 413/612 (67%), Gaps = 19/612 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACAT 203895 ||||||||| |||||||| ||||||| |||| || | | | || |||||||| Sbjct 22613 CTTGTCCACGGTGAACTGGATGGCGT---CGGCTTTCGGACGTCCGCGCATGTAGTACAT 22557 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || ||||||| ||| |||| | ||||||||| | || || || | | Sbjct 22556 GCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAACTTACTGATCGT 22497 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| ||||||||||||| |||||||| ||| ||| ||||||| || || | Sbjct 22496 CGGGTCGGCAATGTGAATGTTCAACGACTGGCTCTGGCAAATG-TAGGCGCCACGGTCCG 22438 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || | | | || ||||||| || |||||||| |||||| || || || Sbjct 22437 CCGACAGGTCCAACACGGCCTTCTGCTTGATTTCCCACACTGTCTTGTACTTCTCCTTGA 22378 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CAT 204132 || | || | || ||| | ||| | ||||| ||| |||| | ||| | Sbjct 22377 CCTGGTCCGGAATGGATT-TCACCTTCTGCACGGAGCCACCGTCAGCCAGGA-TCTGGTT 22320 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | ||| | ||| || |||| | ||||||||| || |||| ||| | Sbjct 22319 GCGCACCTCAGGCGTCCAGATTCCCAGCTCGATCAGCTCTTTCATGAGGTACTTGTTCAC 22260 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| || || || | |||||| | ||| || ||| ||| || | || |||| Sbjct 22259 GATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTATACGGCTCGAT 22200 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 | |||||||||||| ||||||||||| || || |||||||| ||||||| ||| || Sbjct 22199 GGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAG 22140 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGC--ATC 204370 |||||||| | |||| || || | ||| || | |||||||| | | | Sbjct 22139 CGAGTTGCGTATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGTCCAGTCCCACAAACC 22080 Query 204371 G---CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTG 204427 | || ||| |||||||||||||||||||||| ||||| || | ||| | || | Sbjct 22079 GGAAGACGGGG--TCACGCCCCACATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGAG 22022 Query 204428 CCCTTGTACGTC 204439 |||| | ||||| Sbjct 22021 CCCTGGAACGTC 22010 >seq8697 Length=2752 Score = 163 bits (180), Expect = 5e-35 Identities = 559/861 (65%), Gaps = 24/861 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || |||||||||||||||| | || || ||||| | |||| ||||| Sbjct 395 CTTCTCAAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCATCCAGTCGAACGGGTT 454 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||||||| ||| ||| | || || | || || | ||| ||||| || || Sbjct 455 CTTCACGTTGTAGATCTTGGACGCACCCAGCGAGTACAACAGGCGGTCGGCCACGAACTC 514 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || || |||| || || | |||| |||||||| | || Sbjct 515 GATGTATTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCACGGGGAGGGAATCACT 574 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 || ||||| | ||||||| | || || || ||| ||| ||| | || || | | Sbjct 575 CACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATC-GCGTGCACGCGGCTCTCCG 633 Query 159888 CCGGCTTGCCCA--AAATGTG-GTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||||| || || | | || ||| ||||||||| ||||| ||||| | Sbjct 634 GCAGCTTGTTCACCAACTTCGAGT------ACATGAGGCACGCGAAGTCCGTGTGCATGC 687 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 |||||||||| ||||| |||||| || | | | || || ||||||| || ||| || Sbjct 688 CCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTTT 747 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| ||| ||| | | | | || || || ||||||||||| || ||| Sbjct 748 TGAGCCAGAAGATGG-AGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCACGGCAGCGAAC 806 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---GCCCA 160119 |||| || | ||| | || | | | ||||| |||| ||| ||||| Sbjct 807 GCCAGCAGGCGCTCCGGGTAGGACGACACG----CGAGGGTCACACCACTTGAGCGCCCA 862 Query 160120 TTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTC 160179 |||||||| | | |||||| || ||||| ||| | || |||| ||| Sbjct 863 GCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAGGTGATCCTTCTC 922 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 | | |||||||| || | |||||| |||||||| || | ||| | || || Sbjct 923 CACGGCGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTC 982 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 ||| || ||||| ||| |||||| | |||||| | ||||||||| | |||| Sbjct 983 GATAGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACCTCATTGCTGAA 1042 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 | |||| || | || || | |||||| ||| || ||||| |||| |||||| Sbjct 1043 GTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAACGCCAGCACGTG 1102 Query 160360 AGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGC 160419 |||||| || | ||||| | | | || || |||||| ||| ||| || | Sbjct 1103 CTTGATGAAGTGACGCTCGTTGTCGGTCAG---GTTCCCCCAGTCCTTCAGGTCGTGCAC 1159 Query 160420 CAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 || || | ||| || || |||| | |||| || | |||||||| ||| | Sbjct 1160 CAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACATCTGCCACAC 1219 Query 160480 GGCGTGCTCTCTGATCGGAAA 160500 | ||||||| |||||| || Sbjct 1220 GTCGTGCTCCTGGATCGGGAA 1240 >seq8320 Length=26225 Score = 163 bits (180), Expect = 5e-35 Identities = 559/861 (65%), Gaps = 24/861 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || |||||||||||||||| | || || ||||| | |||| ||||| Sbjct 395 CTTCTCAAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCATCCAGTCGAACGGGTT 454 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||||||| ||| ||| | || || | || || | ||| ||||| || || Sbjct 455 CTTCACGTTGTAGATCTTGGACGCACCCAGCGAGTACAACAGGCGGTCGGCCACGAACTC 514 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || || |||| || || | |||| |||||||| | || Sbjct 515 GATGTATTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCACGGGGAGGGAATCACT 574 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 || ||||| | ||||||| | || || || ||| ||| ||| | || || | | Sbjct 575 CACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATC-GCGTGCACGCGGCTCTCCG 633 Query 159888 CCGGCTTGCCCA--AAATGTG-GTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | ||||| || || | | || ||| ||||||||| ||||| ||||| | Sbjct 634 GCAGCTTGTTCACCAACTTCGAGT------ACATGAGGCACGCGAAGTCCGTGTGCATGC 687 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 |||||||||| ||||| |||||| || | | | || || ||||||| || ||| || Sbjct 688 CCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAGGCCGCGCTTTT 747 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| ||| ||| | | | | || || || ||||||||||| || ||| Sbjct 748 TGAGCCAGAAGATGG-AGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCACGGCAGCGAAC 806 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---GCCCA 160119 |||| || | ||| | || | | | ||||| |||| ||| ||||| Sbjct 807 GCCAGCAGGCGCTCCGGGTAGGACGACACG----CGAGGGTCACACCACTTGAGCGCCCA 862 Query 160120 TTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTC 160179 |||||||| | | |||||| || ||||| ||| | || |||| ||| Sbjct 863 GCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAGGTGATCCTTCTC 922 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 | | |||||||| || | |||||| |||||||| || | ||| | || || Sbjct 923 CACGGCGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGATGTTCTC 982 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 ||| || ||||| ||| |||||| | |||||| | ||||||||| | |||| Sbjct 983 GATAGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACCTCATTGCTGAA 1042 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 | |||| || | || || | |||||| ||| || ||||| |||| |||||| Sbjct 1043 GTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAACGCCAGCACGTG 1102 Query 160360 AGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGC 160419 |||||| || | ||||| | | | || || |||||| ||| ||| || | Sbjct 1103 CTTGATGAAGTGACGCTCGTTGTCGGTCAG---GTTCCCCCAGTCCTTCAGGTCGTGCAC 1159 Query 160420 CAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 || || | ||| || || |||| | |||| || | |||||||| ||| | Sbjct 1160 CAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACATCTGCCACAC 1219 Query 160480 GGCGTGCTCTCTGATCGGAAA 160500 | ||||||| |||||| || Sbjct 1220 GTCGTGCTCCTGGATCGGGAA 1240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795065357401840