Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2616 93.3 5e-14 seq2904 82.4 9e-11 >seq2616 Length=17034 Score = 93.3 bits (102), Expect = 5e-14 Identities = 203/298 (68%), Gaps = 7/298 (2%) Strand=Plus/Plus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 ||||| || || || ||||| || || |||| || | ||||| ||||| |||| || Sbjct 3042 GATCTGCCGGTCGAATCGACCGGGACGCAGGATAGCCTTGTCAAGAATATCGGCGCGGTT 3101 Query 15938 CGTTGCGGCGATGACAACAATACC-TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAA 15996 ||| | || | || || | ||| | ||| | ||| ||||||||||| || | Sbjct 3102 CGTACCAGCAAGCACCACCACACCCTCACTCGAGTTGAAA-CCATCCATCTCCACCAGCA 3160 Query 15997 GCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACT-GCGTTGC 16055 ||||||||| || | ||| || || || || || | || | | || || || | || Sbjct 3161 GCTGGTTAAGCGTGTTTTCACGCTCGTCGTT-GCCGCCAGAGAAGTTGCCCTTGCTTCGC 3219 Query 16056 TTTC---CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 16112 | |||| |||||||| ||||| ||||| || |||||||| || ||||||| Sbjct 3220 GCACGGGCCACAGCATCAATTTCATCGATGAACACAATGCATGGAGCGTTCGCGCGAGCC 3279 Query 16113 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT 16170 | | || ||||| ||||||||| | ||||||||||| ||||| || | |||| Sbjct 3280 TCCTTGAACAGATCACGTACACGCGACGGACCCACACCAACGAACATTTCGATGAAGT 3337 >seq2904 Length=53647 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 176885 ACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCG 176944 |||| |||||||| |||||| | || || || || || || |||||||||||||| Sbjct 40326 ACAGTCGCATCACGCACATTCAGAAGTTTGCCGCGGAGGGGAAACACACCGTAGTGATCA 40267 Query 176945 CGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCA 177002 || |||||||| | ||||| || || || || | || ||||||||||| || |||| Sbjct 40266 CGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCTTCAGTCA 40209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620672263868080