Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6149 196 6e-45 seq8697 113 5e-20 seq8320 113 5e-20 seq8199 86.0 7e-12 >seq6149 Length=26765 Score = 196 bits (216), Expect = 6e-45 Identities = 739/1143 (65%), Gaps = 41/1143 (4%) Strand=Plus/Minus Query 106271 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 106330 |||||| ||||||||||||| || ||||| | ||||| || | ||| ||||| || ||| Sbjct 21886 ATAAATGCATCCGCGAGACCCTGGACACCAATACCAACCGGGCGGTGGCGCATGTTGGAC 21827 Query 106331 TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 106390 || || || ||| ||||| || | || |||||||| || | || ||| Sbjct 21826 TTGCGTGCCTCCTCGACGGGGTAGTAGTTGACATCAATGACCTTATTCAAGTTCCGGGTC 21767 Query 106391 ACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 106450 || | ||| || | || | || || | || | || | || | || | ||| Sbjct 21766 ACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACA 21713 Query 106451 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 106510 |||| || ||||| | || |||| ||||| || ||| |||||| |||||| Sbjct 21712 AACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTAC 21653 Query 106511 TCTAAAATTTCTGTACACAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 || | ||| || ||||||||| || | ||||| || | |||| ||||| Sbjct 21652 TCCATAATCTCGCAGCACAAGTTGCTTGAGCGG---ATCGTGCCGAGGTTCTGCTGGTTC 21596 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAC 106627 ||| |||| ||| |||||||| |||||| | ||| || ||||| |||| | Sbjct 21595 GACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCTGTCTCAATCTGCGCG 21536 Query 106628 TTGAGAATTGCCTTCCACACATCGGCGGCTGGTACA--ATGGCGTTG---GCCCGTCCCT 106682 | || || || ||||| || ||||| || | ||| || ||||||| Sbjct 21535 TCCAGGATGGCGAACCACA-----GCTGCTGGGCGTTGATCGTCTTGCGCGCGCGTCCCT 21481 Query 106683 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCT 106741 || ||||||||| ||| || | || ||||| || ||| | || ||| |||| || Sbjct 21480 CCTTCTCGTACTTCTCGTACAGCGTCTCGAACTCGTCGCCC-CAGCACTCGTAGAGTCCG 21422 Query 106742 GGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAA 106801 || |||| || || ||||| || ||| | ||| | |||| || ||||||||||| Sbjct 21421 GGGGCCTCGTTGGGGCAGAACAGGCTCCACTTGCCATTCGCCTCCACGCGCTTCATGAAC 21362 Query 106802 AGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTG 106860 || || || | |||||| | |||| | || | | | | || | |||| ||| || Sbjct 21361 AGATCGGGGACCCACAGAGCGTAAAACAAGTCGCGCGCGCGGTGCAGC-TCGTTACCGTG 21303 Query 106861 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 106920 || || | ||| |||||||| | | || |||||||| ||||| || |||| || Sbjct 21302 ATTCTTACGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGC 21243 Query 106921 GATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 106977 || ||||| || || | || | || | |||||||| || ||| |||| || || Sbjct 21242 GAACGATCCTTTGCGCTTGCCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTGAAGAC 21183 Query 106978 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTAT 107036 | ||||| || || || || | ||| || || || || || || || | || Sbjct 21182 CCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGAT-GTAGCTGTTCG 21124 Query 107037 TGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCAC 107096 |||| | | | || || || |||||||| || |||||||| ||||| ||| | Sbjct 21123 TGGCGCGGATGTTGTGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGC 21064 Query 107097 ACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGC 107156 ||| | | || || | || || || | || ||||| |||| |||| | ||||||| Sbjct 21063 ACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAGC 21004 Query 107157 AACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---AA 107213 | |||| |||||| | || || || || || ||||| || || || ||||| || Sbjct 21003 ACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAA 20944 Query 107214 TGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 107273 |||||| || ||||| ||||| || | || | | | ||||||| | || Sbjct 20943 AGAACAT---CTGTGACATGAGCTCGTACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGT 20887 Query 107274 GGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGA 107333 |||| || | ||||| ||||| | ||| | ||||| |||| || |||| | | Sbjct 20886 GGATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTGCCGTTCA 20827 Query 107334 GCCGTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 || ||||| |||| | ||| || ||||||| || ||||| | | ||| |||| Sbjct 20826 --CGCGGAAGAGGTAGCCCCGCTCGAGCGTTTTGAAGCCGAAGTAGTCGTACTCAAAGTC 20769 Query 107392 CCG 107394 ||| Sbjct 20768 CCG 20766 >seq8697 Length=2752 Score = 113 bits (124), Expect = 5e-20 Identities = 349/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || ||||||||||||||||||||||| || | || || | ||||| Sbjct 381 TACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCATC 440 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGAC 117103 |||| || || |||||| |||| | || || |||||| | | || | || | Sbjct 441 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACGCACCC-AGCGAGTACAAC-AGGC 498 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 | || | ||| |||| ||||| | | |||| | |||||||||| ||||| || | Sbjct 499 GGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 558 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 ||||| | || | |||| | | ||||||| | || || || |||||| |||| Sbjct 559 CGGGGAGGGAATCACTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 618 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAA 117278 | | | ||| || || | || ||| || | | | | |||| | || Sbjct 619 GCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAA 673 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 ||| ||| | ||||| || ||| || || || || ||||||| || || ||||| Sbjct 674 GTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 733 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398 ||| || ||||| || | ||| | || | |||||| || || |||||||| || ||||| Sbjct 734 GAGGCCGCGCTTTTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTC 793 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTT-GTGTCAAACCATT 117457 ||| || ||||| | |||||||| | | |||| ||| || | |||| |||| | Sbjct 794 CACGGCAGCGAACGCCAGCAGGCGCTCCGGGTAGGA-CGACACGCGAGGGTCACACCACT 852 Query 117458 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | | ||||| ||||||||||| | || || | || | |||||| Sbjct 853 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 901 >seq8320 Length=26225 Score = 113 bits (124), Expect = 5e-20 Identities = 349/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || ||||||||||||||||||||||| || | || || | ||||| Sbjct 381 TACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCATC 440 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGAC 117103 |||| || || |||||| |||| | || || |||||| | | || | || | Sbjct 441 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACGCACCC-AGCGAGTACAAC-AGGC 498 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 | || | ||| |||| ||||| | | |||| | |||||||||| ||||| || | Sbjct 499 GGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 558 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 ||||| | || | |||| | | ||||||| | || || || |||||| |||| Sbjct 559 CGGGGAGGGAATCACTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 618 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAA 117278 | | | ||| || || | || ||| || | | | | |||| | || Sbjct 619 GCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAA 673 Query 117279 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCAT 117338 ||| ||| | ||||| || ||| || || || || ||||||| || || ||||| Sbjct 674 GTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 733 Query 117339 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 117398 ||| || ||||| || | ||| | || | |||||| || || |||||||| || ||||| Sbjct 734 GAGGCCGCGCTTTTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTC 793 Query 117399 CACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTT-GTGTCAAACCATT 117457 ||| || ||||| | |||||||| | | |||| ||| || | |||| |||| | Sbjct 794 CACGGCAGCGAACGCCAGCAGGCGCTCCGGGTAGGA-CGACACGCGAGGGTCACACCACT 852 Query 117458 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | | ||||| ||||||||||| | || || | || | |||||| Sbjct 853 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 901 >seq8199 Length=10525 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 5181 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 5240 Query 136224 CAGGTAGGAGCT 136235 | |||||||||| Sbjct 5241 CCGGTAGGAGCT 5252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589914139544360