Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5367 96.9 2e-15 seq6965 84.2 1e-11 >seq5367 Length=20193 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/198 (71%), Gaps = 11/198 (6%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| |||||||| || | || | || || ||||| || || || || || Sbjct 7867 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 7926 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG----- 34908 || || |||||||| |||| | || |||||||| || ||||| ||||| Sbjct 7927 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 7986 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 ||||| ||| | | ||| || || | || ||||| |||||||| || ||||||| Sbjct 7987 ATGCTGTCGGAT-----GGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCA 8041 Query 34969 CAAAGATCTGCAT-ATTC 34985 ||||||||||||| |||| Sbjct 8042 CAAAGATCTGCATGATTC 8059 >seq6965 Length=79392 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || |||||||| || ||||| || Sbjct 54349 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAG 54290 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| | || | || |||||||| || ||||| || ||| Sbjct 54289 ATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTG 54230 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | ||| || || | || || || || ||||| | ||||||||| Sbjct 54229 TCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACA 54170 Query 34971 AAGATCTGCATATTCGTAGACTTGTCGTGATT 35002 ||||||||||| ||| | |||||| || || Sbjct 54169 AAGATCTGCATGTTCTT---CTTGTCTTGGTT 54141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324597837449592