Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6149 340 3e-88 seq8697 284 2e-71 seq8320 284 2e-71 >seq6149 Length=26765 Score = 340 bits (376), Expect = 3e-88 Identities = 1037/1575 (66%), Gaps = 62/1575 (4%) Strand=Plus/Minus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || ||| ||| ||||| | ||||| | | | ||| | ||| || || || || Sbjct 22265 GTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTATACGG 22206 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||||||| ||||||||| |||| |||||| || || || |||||||| |||||||| Sbjct 22205 CTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCAC 22146 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG--CGCCGA-AGCTCTGCCCAGTC 213085 ||||| ||| | | ||||||| | || | | | || ||| | | |||||| Sbjct 22145 GAGGAGCGAGTTGCGTATGCCGTGCTTG---ATCACGTTCTCCTTGAGCGCAGTCCAGTC 22089 Query 213086 CCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145 ||| || || || || | |||| ||||||||| ||||| ||||| || || Sbjct 22088 CCA-----CAAACCGGAAGACGGGGT-CACGCCCCACATGTCGAACTGGAAGATACCCTT 22035 Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 ||| | || ||||||| | | ||| ||||| |||||||||| | ||| || Sbjct 22034 GCTGGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTCCATCGA 21975 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 || || || | |||||||||||| || || || || | | ||||||| | ||| | Sbjct 21974 CGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGCTTG 21915 Query 213266 TGGGGACGTGAAGGGCATCAT-CATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 ||| | ||| | ||| | |||| | || |||| || || |||||||| || | Sbjct 21914 CGGGCTCTCGAACG-CATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACACCAA 21856 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTG 213383 | || | || | ||| | || ||| |||||| | || |||||| | |||||| ||||| Sbjct 21855 TACCAACCGGGCGGTGGCGCATGTTGGACTTGCGTGC-CTCCTCGACGGGGTAGTAGTTG 21797 Query 213384 CAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCG 213443 || |||| ||| || | ||| ||||| |||| ||||| || | | ||| | || | Sbjct 21796 ACATCAATGACCTTATTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAGCTTCTGG 21737 Query 213444 TGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTG 213503 | |||||||| || |||| |||||||| || ||||| | ||||||||| Sbjct 21736 TAGTTGAACACT------CCATCCTCCACAAACTTGGGGAGGGCCACAGACGCCAGGTTG 21683 Query 213504 CAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCA 213562 || || |||||||| | | | | | ||||||||||| |||||| ||||| |||||| | Sbjct 21682 CACACCGCCACCTCATCGGGCGAC-GTGTACTCCATAATCTCGCAGCACAAGTTGCTTGA 21624 Query 213563 TCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCAT 213622 ||||| ||||| |||||||| ||||| ||||| |||||| | |||||||| ||||| Sbjct 21623 GCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCAT 21564 Query 213623 GTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTT 213682 | | || || ||||| | ||| | |||| || | ||| || | | ||| || Sbjct 21563 GAACGGCACGCCTGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCGTT 21504 Query 213683 GACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTC 213742 || | | | | ||| | | |||||||| ||||| ||| | ||| || Sbjct 21503 GATCGTCTTGCGCGCGCGTCCCTCCTT---CTCGTACTTCTCGTACAGCGTCTCGAACTC 21447 Query 213743 GTGGCCCCAGACCCTGTCCAGTCC--CGGACAGGATGCGGGACACATGAGGCTCCA-GTC 213799 || ||||||| | || ||||| || | | | ||| || | |||||||| | Sbjct 21446 GTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCGTT--GGGGCAGAACAGGCTCCACTTG 21389 Query 213800 CCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTC 213859 || || ||| || | || ||||||||| || ||||||||||| ||| |||| ||| Sbjct 21388 CCATTCGCCTC-CACGCGCTTCATGAACAGATCGGGGACCCACAGAGCGTAAAACAAGTC 21330 Query 213860 CCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGAT 213916 | | | | ||||| || | || || || ||||| || || || || || | Sbjct 21329 GCGCGCGCGGTGCAGCTCGT-TAC-CGTGA-TTCTTACGCAGCTCCAGGAACTCGAACAC 21273 Query 213917 GTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTG 213973 ||| |||||||||||||||| ||||||||| || | || | |||| |||||||| Sbjct 21272 GTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGATCCTTTGCGCTTGCCTCCGCCCTG 21213 Query 213974 GTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTG 214033 |||||| | ||| |||||||| | ||| | ||| | | ||||||||| Sbjct 21212 GTCCACATAGCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATGA 21153 Query 214034 TCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTAT 214093 |||||| || || || || | | ||| | | |||| ||| | || || Sbjct 21152 TCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTAATGCCAAT 21093 Query 214094 GCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCAT 214153 || ||||| |||||||||| ||||| || | | || || ||||| | || Sbjct 21092 ACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAAT 21033 Query 214154 GCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGA 214213 ||| || | | ||||| |||||| ||| ||||| || | | || ||| | Sbjct 21032 CGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGTGCCGGC 20973 Query 214214 GTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTC 214273 ||| || |||||||| | || || | | ||| | | || | |||| ||| || | Sbjct 20972 GTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGTGACATGAGCTCGTACGTGTG 20913 Query 214274 CAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCT 214332 ||| | | ||||||| ||||||||||| || || ||| | ||| | ||| |||| Sbjct 20912 CAGTGCCGCCTGGATGTCTTGCTTGTGGATACCCAGCGC-CACGCGCATGATCATCTGCT 20854 Query 214333 GGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGCAGGTAGGAGCGCTCCAGAG 214386 |||| | ||| | | |||| ||| || || |||||| ||||| || | Sbjct 20853 GGGGGCGCTCCA--CGACCTT----GCCGTTCACGCGGAAGAGGTAGCCCCGCTCGAGCG 20800 Query 214387 TCTTGAACCCAAAGTAGGAGTAGGTATGATCGTTCC---CGTGTATGAGGGCAGCGTCCA 214443 | ||||| || |||||| ||| | | || || |||| |||| ||| | || || Sbjct 20799 TTTTGAAGCCGAAGTAGTCGTA---CTCAAAGTCCCGGTCGTGGATGATGGCCGAGTTCA 20743 Query 214444 GCTCTTCCGCGTGCT 214458 |||| ||| ||||| Sbjct 20742 GCTCGTCCTTGTGCT 20728 >seq8697 Length=2752 Score = 284 bits (314), Expect = 2e-71 Identities = 566/835 (68%), Gaps = 5/835 (1%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | |||||||||||||| ||||| |||| | |||||| | ||||| Sbjct 380 GTACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCAT 439 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| ||| || | | | | |||| | | || |||| | Sbjct 440 CCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACGCACCCAGCGAGTACAACAGGCG 499 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||||| ||||||| | ||||||||| || || ||| Sbjct 500 GTCGGCCACGAACTCGATGTATTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCAC 559 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 ||| | | | | | ||||| | ||| ||| ||| || || | ||| ||| | Sbjct 560 GGGGAGGGAATCACTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGTG 619 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| ||| | | ||||| || ||| | || | | ||| || ||||| Sbjct 620 CACGCGGCTCTCCGGCAGCTTGTTCACCAA---CTTCGAGTACATGAGGCACGCGAAGTC 676 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| ||| |||||||||||||||||| |||| ||||||| ||||||||||||| Sbjct 677 CGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAG 736 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || |||||||||||| || | ||| ||||| |||||||| ||||||||||| Sbjct 737 GCCGCGCTTTTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCAC 796 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGAAA 48320 || |||||||| || | ||| | | || | | | | | | | ||| | Sbjct 797 GGCAGCGAACGCCAGCAGGCGCTCCGGGTAGGACGACACGCGAGGGTCACA-CCACTTGA 855 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCT 48380 |||||||| |||||||||| | ||| || |||||||| ||||| || | || | | Sbjct 856 GCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAGGTGAT 915 Query 48381 TGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCA 48440 ||| | |||||| | || || || |||| | ||||| ||| ||||| | Sbjct 916 CCTTCTCCACGGCGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGA 975 Query 48441 CATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTG 48500 ||||| |||||||||||||| ||||||||| | ||||| ||||||||| || Sbjct 976 TGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACCTCAT 1035 Query 48501 TGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAA 48560 || ||| || | ||| ||||| || || || || || ||||| ||||| || | Sbjct 1036 TGCTGAAGTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAACGCCA 1095 Query 48561 GGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTT 48620 | || || || | ||| || |||||||||| ||| || |||| ||| | ||| | Sbjct 1096 GCACGTGCTTGATGAAGTGACGCTCGTTGTCGGTCAGGTTCCCCCAGTCCTTCAGGTCGT 1155 Query 48621 TGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 ||||||||| || || | |||||||| ||||| || || |||||||| Sbjct 1156 GCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACAT 1210 >seq8320 Length=26225 Score = 284 bits (314), Expect = 2e-71 Identities = 566/835 (68%), Gaps = 5/835 (1%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | |||||||||||||| ||||| |||| | |||||| | ||||| Sbjct 380 GTACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCAT 439 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| ||| || | | | | |||| | | || |||| | Sbjct 440 CCAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACGCACCCAGCGAGTACAACAGGCG 499 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||||| ||||||| | ||||||||| || || ||| Sbjct 500 GTCGGCCACGAACTCGATGTATTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCAC 559 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 ||| | | | | | ||||| | ||| ||| ||| || || | ||| ||| | Sbjct 560 GGGGAGGGAATCACTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGTG 619 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| ||| | | ||||| || ||| | || | | ||| || ||||| Sbjct 620 CACGCGGCTCTCCGGCAGCTTGTTCACCAA---CTTCGAGTACATGAGGCACGCGAAGTC 676 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| ||| |||||||||||||||||| |||| ||||||| ||||||||||||| Sbjct 677 CGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCATGAG 736 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || |||||||||||| || | ||| ||||| |||||||| ||||||||||| Sbjct 737 GCCGCGCTTTTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTCCAC 796 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGAAA 48320 || |||||||| || | ||| | | || | | | | | | | ||| | Sbjct 797 GGCAGCGAACGCCAGCAGGCGCTCCGGGTAGGACGACACGCGAGGGTCACA-CCACTTGA 855 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCT 48380 |||||||| |||||||||| | ||| || |||||||| ||||| || | || | | Sbjct 856 GCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGCACGCAGCAGGTGAT 915 Query 48381 TGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCA 48440 ||| | |||||| | || || || |||| | ||||| ||| ||||| | Sbjct 916 CCTTCTCCACGGCGTCCTTGATGTATGTGTCGATCAGCAGCGAGTACACCTCCGAGTGGA 975 Query 48441 CATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTG 48500 ||||| |||||||||||||| ||||||||| | ||||| ||||||||| || Sbjct 976 TGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCCGGCACCTGCACCTCAT 1035 Query 48501 TGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAA 48560 || ||| || | ||| ||||| || || || || || ||||| ||||| || | Sbjct 1036 TGCTGAAGTTCATCGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAACGCCA 1095 Query 48561 GGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTT 48620 | || || || | ||| || |||||||||| ||| || |||| ||| | ||| | Sbjct 1096 GCACGTGCTTGATGAAGTGACGCTCGTTGTCGGTCAGGTTCCCCCAGTCCTTCAGGTCGT 1155 Query 48621 TGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 ||||||||| || || | |||||||| ||||| || || |||||||| Sbjct 1156 GCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACAT 1210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931427548437760