Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6149 176 5e-39 seq8697 113 5e-20 seq8320 113 5e-20 seq2616 89.7 6e-13 seq2904 86.0 7e-12 >seq6149 Length=26765 Score = 176 bits (194), Expect = 5e-39 Identities = 737/1141 (65%), Gaps = 37/1141 (3%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||||| ||| | | ||||| || ||||||| || ||| | |||| ||||| | Sbjct 20766 CGGGACTTTGAGTACGACTACTTCGGCTTCAAAACGCTCGAGCGGGGCTACCTCTTCCGC 20825 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | | | |||| || |||| ||| ||| | ||| ||||||| || || | || | Sbjct 20826 G--TGAACGGCAAGGTCGTGGAGCGCCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTA 20883 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 ||||| | ||||||| | | | || | || ||||| ||||| || |||| Sbjct 20884 TCCACAAGCAAGACATCCAGGCGGCACTGCACACGTACGAGCTCATGTCACAG---ATGT 20940 Query 75306 TCATT---CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCA 75362 || || ||||| || || || ||||| || || || || || | |||||| |||| Sbjct 20941 TCTTTACGCACGCGACGCCCACGCTCTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGT 21000 Query 75363 GTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGG 75422 |||||||| | |||| |||| ||||| || | || || || | || || | | Sbjct 21001 CGTGCTTCCTGCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACGCTCAAGC 21060 Query 75423 AGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAG 75482 |||| ||| ||||| |||||||| || |||||||| || || || | | | | Sbjct 21061 AGTGCGCGTGCATCTCCAAGTGGGCCGGAGGTATTGGCATTAGTATGCACAACATCCGCG 21120 Query 75483 CCAATAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTT 75541 ||| || | || || || || || || || ||| | || || || || ||||| Sbjct 21121 CCACGAACAGCTAC-ATCCGCGGCACGAACGGATCATCCAACGGGATCATCCCCATGCTG 21179 Query 75542 CGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAG-CGG-GGCGT-CGCAAGGGGTCC 75598 | || || |||| ||| || |||||||| | || | ||| ||| ||||| || || Sbjct 21180 AGGGTCTTCAACGACACGGCTCGCTATGTGGACCAGGGCGGAGGCAAGCGCAAAGGATCG 21239 Query 75599 ATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTC 75658 |||| ||||| |||| || ||||| ||||| | | |||||||| ||| | || Sbjct 21240 TTCGCCATCTACCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTGGAGCTGCGTAAG 21299 Query 75659 AACCAAGGTGACGAAGAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGA 75717 || || ||| |||| | || | | | | || | |||| | |||||| | || || Sbjct 21300 AATCACGGTAACGA-GCTGCACCGCGCGCGCGACTTGTTTTACGCTCTGTGGGTCCCCGA 21358 Query 75718 CCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGC 75777 || ||||||||||| || |||| | ||| | ||| || ||||| || || |||| Sbjct 21359 TCTGTTCATGAAGCGCGTGGAGGCGAATGGCAAGTGGAGCCTGTTCTGCCCCAACGAGGC 21418 Query 75778 ACCAGGTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAG 75836 || || |||| ||| || | ||| || ||||| || | || ||| ||||| || Sbjct 21419 CCCCGGACTCTACGAGTGCTG-GGGCGACGAGTTCGAGACGCTGTACGAGAAGTACGAGA 21477 Query 75837 AGGAGGGTAGAGC---CAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCA 75893 ||||||| | || ||| ||| | || | || | || ||| || || || Sbjct 21478 AGGAGGGACGCGCGCGCAAGACGA-TCAACGCCCAGCAGCTG--TGGTTCGCCATCCTGG 21534 Query 75894 AATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGA 75953 | | |||| ||||| || || | ||||| |||||||| || ||| ||| Sbjct 21535 ACGCGCAGATTGAGACAGGCGTGCCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGT 21594 Query 75954 GTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAA--ATCTT-TGCACGGAAATTTTAG 76010 ||||| |||| | || || ||| |||||| | ||| ||| || ||| | | Sbjct 21595 CGAACCAGCAGAACCTCGGCACGATC---CGCTCAAGCAACTTGTGCTGCGAGATTATGG 21651 Query 76011 AGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT 76070 ||||||| |||||| ||| || ||||| |||| || | ||||| || |||| Sbjct 21652 AGTACACGTCGCCCGATGAGGTGGCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGT 21711 Query 76071 ATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTG 76130 ||| | || | || | || | || | || || | || | || ||| | | Sbjct 21712 TTGTGGAGGATG-GAGT-----GTTCAACTACCAGAAGCTGTACGAGGTGACCAAGGTGG 21765 Query 76131 TTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAA 76190 | ||| || | || |||||||| || | || ||||| ||| || || | Sbjct 21766 TGACCCGGAACTTGAATAAGGTCATTGATGTCAACTACTACCCCGTCGAGGAGGCACGCA 21825 Query 76191 AGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTA 76250 |||| || ||||| ||| | || ||||| | ||||| || ||||||||||||| ||||| Sbjct 21826 AGTCCAACATGCGCCACCGCCCGGTTGGTATTGGTGTCCAGGGTCTCGCGGATGCATTTA 21885 Query 76251 T 76251 | Sbjct 21886 T 21886 >seq8697 Length=2752 Score = 113 bits (124), Expect = 5e-20 Identities = 349/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || | ||||||||||| ||||| | || |||| |||| Sbjct 901 GCCATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGAC 842 Query 65056 AC-AAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | || ||| |||| | | |||||||| | ||||| || |||||||| || || Sbjct 841 CCTCGCGTGTCG-TCCTACCCGGAGCGCCTGCTGGCGTTCGCTGCCGTGGAGGGCATTTT 783 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| | || | ||| | || ||||| || |||||||| || || Sbjct 782 CTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAAAAGCGCGGCCTCATGCCTGGTCT 723 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 ||||||| || || || || ||| || ||||| | ||| ||| || | |||| Sbjct 722 GAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCG-CGTGCC 664 Query 65235 GC-TCTTCAAGACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTG 65289 | | | | || ||| || | || || ||| | | ||||| |||||| Sbjct 663 TCATGTACTCGAAGTTG-GTGA---ACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTG 608 Query 65290 AAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATC 65349 || || || | ||||||| | | |||| | || | ||||| | || ||| Sbjct 607 CGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGTGATTCCCTCCCCGTGGAGCTGATC 548 Query 65350 GGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAA 65409 || |||||||||| | |||| | | ||||| |||| ||| | || || || | | Sbjct 547 GGCATGAACTCTGCGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCT-GTTGTA 489 Query 65410 CAAGTTGGGGTGCCACC--CATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACA 65467 | | | |||||| || || | |||| |||||| || || |||| ||||| | | Sbjct 488 CTCGCT-GGGTGCGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGA 430 Query 65468 TTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | || | || ||||||||||||||||||||||| || || || || Sbjct 429 TCTCGCTACAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTA 381 >seq8320 Length=26225 Score = 113 bits (124), Expect = 5e-20 Identities = 349/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || | ||||||||||| ||||| | || |||| |||| Sbjct 901 GCCATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGAC 842 Query 65056 AC-AAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | || ||| |||| | | |||||||| | ||||| || |||||||| || || Sbjct 841 CCTCGCGTGTCG-TCCTACCCGGAGCGCCTGCTGGCGTTCGCTGCCGTGGAGGGCATTTT 783 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| | || | ||| | || ||||| || |||||||| || || Sbjct 782 CTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAAAAGCGCGGCCTCATGCCTGGTCT 723 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 ||||||| || || || || ||| || ||||| | ||| ||| || | |||| Sbjct 722 GAGCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCG-CGTGCC 664 Query 65235 GC-TCTTCAAGACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTG 65289 | | | | || ||| || | || || ||| | | ||||| |||||| Sbjct 663 TCATGTACTCGAAGTTG-GTGA---ACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTG 608 Query 65290 AAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATC 65349 || || || | ||||||| | | |||| | || | ||||| | || ||| Sbjct 607 CGTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGTGATTCCCTCCCCGTGGAGCTGATC 548 Query 65350 GGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAA 65409 || |||||||||| | |||| | | ||||| |||| ||| | || || || | | Sbjct 547 GGCATGAACTCTGCGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCT-GTTGTA 489 Query 65410 CAAGTTGGGGTGCCACC--CATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACA 65467 | | | |||||| || || | |||| |||||| || || |||| ||||| | | Sbjct 488 CTCGCT-GGGTGCGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGA 430 Query 65468 TTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 | || | || ||||||||||||||||||||||| || || || || Sbjct 429 TCTCGCTACAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTA 381 >seq2616 Length=17034 Score = 89.7 bits (98), Expect = 6e-13 Identities = 274/419 (65%), Gaps = 11/419 (3%) Strand=Plus/Minus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 |||||| ||||||||| ||||| || || | || ||| |||||||| ||||| || Sbjct 3456 TGGTGCGAAGATCCCCAAGGGCGCGCTGCTTGTTGGCCCGCCTGGTACGGGTAAGACGCT 3397 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAA 175394 || || |||| || || || | | || || ||| || ||||| | | Sbjct 3396 GCTGGCGAAGGCCACGGCTGGCGAGGCCAGCGTGCCGTTCTTCAGCATCTCTGGTTCGGA 3337 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||| | || ||||| |||||||||||| | | || || ||||| || | || Sbjct 3336 CTTCATCGAAATGTTCGTTGGTGTGGGTCCGTCGCGTGTACGTGATCTGTTCAAGGAGGC 3277 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGG---GCAAGCA 175511 |||| || ||||| ||||| ||||| ||||| |||||||| |||| | || Sbjct 3276 TCGCGCGAACGCTCCATGCATTGTGTTCATCGATGAAATTGATGCTGTGGCCCGTGCGCG 3217 Query 175512 ACGC-AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTAC 175570 | || || || | | || | || || |||||| | ||| | || |||| || || | Sbjct 3216 AAGCAAGGGCAACTTCTCTGGCGGC-AACGACGAGCGTGAAAACACGCTTAACCAGCTGC 3158 Query 175571 TCACCGAGATGGATGGCTTTGAC---AATGAGACTGGCATTGTGGTTATTGCGGCCACTA 175627 | ||||||||||| || || | |||| || | ||||| |||| | || | Sbjct 3157 TGGTGGAGATGGATGGTTTCAACTCGAGTGAG---GGTGTGGTGGTGCTTGCTGGTACGA 3101 Query 175628 ATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGATC 175686 | |||| ||||| ||||| | || |||| || || ||||| || || || ||||| Sbjct 3100 ACCGCGCCGATATTCTTGACAAGGCTATCCTGCGTCCCGGTCGATTCGACCGGCAGATC 3042 >seq2904 Length=53647 Score = 86.0 bits (94), Expect = 7e-12 Identities = 215/321 (67%), Gaps = 17/321 (5%) Strand=Plus/Plus Query 13613 CTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTT 13672 || ||| | || || |||||||| || || | || || || || ||||| | || ||| Sbjct 40202 CTAATTTTGACTGAAGGTGATTCTGCCAAGGCACTGGCCGTGGCTGGTCTGGCAGTGGTT 40261 Query 13673 GGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGCT 13732 || |||||||||||||||||||| || || ||||| ||| | |||||| || || || Sbjct 40262 GGACGTGATCACTACGGTGTGTTTCCCCTCCGCGGCAAACTTCTGAATGTGCGTGATGCG 40321 Query 13733 TCGGTGGCACAGCTCACATCAAA---CCAGGAGTTCAACGATCTCAAGAAGATCCTTGGT 13789 | |||| ||||| | | ||| || ||||| | || | ||| |||||| Sbjct 40322 ACTGTGGTGCAGCT-AGGTAAAAATGCC--GAGTTTGCGCACCTTTGTACGATTCTTGGT 40378 Query 13790 CTTCAACAAGGAAAAG-ACTACCAA---GATG------TTTCTGAACTTCGCTATGGTCG 13839 | || || ||| || ||||| | || | | |||| || ||||| || Sbjct 40379 C-TCCGCATGGACGAGCACTACGGAACGGAGGAGGCACGTCAAAAACTGCGTTATGGGCG 40437 Query 13840 TCTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATCCTAAA 13899 | | || ||||||||| || |||| || || ||||||||||||||| || | || Sbjct 40438 TGTGATTGCCATGACAGATCAGGACCATGACGGCTCGCACATCAAGGGTCTCCTCTTCAA 40497 Query 13900 TATGATCCACTACTTCTGGCC 13920 || ||||| |||||||| Sbjct 40498 CCTGTTCCACACATTCTGGCC 40518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596502195092320