Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4382 140 1e-27 seq7033 98.7 3e-15 >seq4382 Length=7736 Score = 140 bits (154), Expect = 1e-27 Identities = 199/277 (72%), Gaps = 10/277 (4%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || |||||||||||||| ||| || || || ||||| |||||||| || || ||||| Sbjct 4766 CGGCGCTGAATATAACCCGTTTCAGCAGTCTTCACAGCCGTATCAATCAGTCCTTCACGA 4825 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || |||||||| | ||||| || |||||| | | ||| | || Sbjct 4826 CCACCCATGGCGTGGAAGAAAAACTCTTGGGGGGTGAGCCCCTTCAGGTACGAGTTTTCT 4885 Query 302713 ACGAAACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTG 302769 ||||| ||||| |||||| | ||| || |||| |||| ||||| |||| | Sbjct 4886 ACGAACCCACGACTCTCGGGACCCAGATCATC---CTTGCCGTAGTGCGGCAGCGTCCGG 4942 Query 302770 TTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATC 302829 | | | ||||| ||||||||||| || || || |||||||| |||| || | ||| Sbjct 4943 TGGTTGAAACCGTACGGGATACGCTTGCCTTCGACATTCTGCTGACCCACACAAGCAATA 5002 Query 302830 ATCTGCGAAATATTTAAATCACTG--CCCTTGGAGCC 302864 |||||||| ||||| ||| | | ||||||||||| Sbjct 5003 ATCTGCGAGATATT--AATGAAGGAACCCTTGGAGCC 5037 >seq7033 Length=58161 Score = 98.7 bits (108), Expect = 3e-15 Identities = 362/562 (64%), Gaps = 10/562 (2%) Strand=Plus/Minus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| |||||| |||||||| || || | ||| | |||||| |||||||| Sbjct 47513 CCGTGAGAGATCAGACAATCGCGCTCCATCTCCCCCATACGCAAACCACCCTCGCGAGCA 47454 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || ||||| ||||| || | Sbjct 47453 CGACCCTCCATCGGCTGGCGCGTCAGCATCGTCACGGGACCACGCGAGCGCGAGTGGATC 47394 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTCGAA 251667 || || | ||||||||||| || ||||||||||| | ||| ||||| ||||| || Sbjct 47393 TTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAACGTGGGTCCGATAAAGATCTGCGCT 47334 Query 251668 GGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTC--ATAAC 251725 | || | || || | || | ||||| || ||||| || | | ||| || | Sbjct 47333 GTCAGGCGACGGCCGGTGTGCCCGCTGTACATTACCTCGTTACCGT--GCTTCTGGTACC 47276 Query 251726 CAAGTTTCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTGGTGCCGT 251785 | || || || || |||||| | || | | | | || ||| ||| Sbjct 47275 CCAGGTTGTGCAGGGTGTCGGCAATAGCTTGAACGGTCACATCCGTGAACGGCGTGGCGT 47216 Query 251786 CTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGA 251845 | || | |||| | || | |||||||||| | || ||| || || | | Sbjct 47215 CGCCTTCGTCACCCGTCTGCGACGACACTTTGCCGAGCAGACACTCGACAAGATGCCCCA 47156 Query 251846 TAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCAG 251905 |||||||| |||||||| || || || | | ||| ||||| | | || || Sbjct 47155 CCGTCATACGCGACGGAATAGCGTGAGGGTTCACAACGATATCGGGCGTGATGCCCTCCA 47096 Query 251906 CAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTTTCCAATAGTTCCCTTTTGTCCGT 251962 | || || ||||| || ||||| | || | | ||||| || ||||| ||||||| Sbjct 47095 CGGTAAATGGCATGTC---TTCCTGGCGGTACGTCATACCAATCGTACCCTTCTGTCCGT 47039 Query 251963 GACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTAC 252022 |||| || ||||| |||||||| |||| |||| | || | ||||||||| Sbjct 47038 GACGCGATGCAAACTTGTCACCAATCTGAGGAATACGAATGTTGCGGAAGCGAACCTTGG 46979 Query 252023 AGAAGTTGTAACCATCACCGTT 252044 ||| ||| |||||||| |||| Sbjct 46978 TGAACTTGAAACCATCAGCGTT 46957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471647145584143