Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6149 156 4e-33 seq6965 118 1e-21 seq5367 86.0 6e-12 >seq6149 Length=26765 Score = 156 bits (172), Expect = 4e-33 Identities = 909/1434 (63%), Gaps = 79/1434 (6%) Strand=Plus/Minus Query 138462 GTACAGATTC--AACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCA 138519 || ||||||| | || ||||| || || || || || |||| | || | || ||| Sbjct 22306 GTCCAGATTCCCAGCTCGATCAGCTCTTTCATGAGGTACTTGTTCACGATCGTGAACTCA 22247 Query 138520 CCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTT 138579 || |||| || || || ||| ||||| || | ||||| | || |||||||| Sbjct 22246 CCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTATACGGCTCGATGGACTCGTTGTTG 22187 Query 138580 CCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAA 138639 |||| |||||||||||| | ||| || ||||| ||||| | || || || |||| Sbjct 22186 CCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTTGCGTATG 22127 Query 138640 CCGTGAAGCTTGATT-CGTTC--CTTGAGCGACGACCAGTCCCACAAATCGCTAG---GT 138693 ||||| |||||| ||||| |||||||| | ||||||||||||| || || | Sbjct 22126 CCGTG---CTTGATCACGTTCTCCTTGAGCGCAGTCCAGTCCCACAAACCGGAAGACGGG 22070 Query 138694 TTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAA 138753 | | |||||| ||| |||| || || ||| || || || ||| | | ||| Sbjct 22069 GTCACGCCCCACATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGAGCCCTGGAACGTC 22010 Query 138754 TCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATA 138813 ||||| || | ||| | || | ||| | || ||| | | | | ||||| || Sbjct 22009 TCGTACGGGCCCAGCTCCTTGGCGATCTCCATCGACGTCTCCATAGAAGCGTAGTAGATC 21950 Query 138814 GTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG------CATG 138867 || ||| || | | ||||| ||||| | | ||||||| ||| |||| Sbjct 21949 GTCTCGAAGATGTTCATGTTGAGTTCACGGGCTTGCGGGCTCTCGAACGCATAGTTCATG 21890 Query 138868 CGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGC 138927 ||| | || || || || || || || || || | || || ||||| |||||| Sbjct 21889 AGGA------TAAATGCATCCGCGAGACCCTGGACACCAATACCAACCGGGCGGTGGCGC 21836 Query 138928 AGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAA 138987 | || ||| ||| | |||| || || ||||| ||||| |||| || || || Sbjct 21835 ATGTTGGACTTGCGTGCCTCCTCGACGGGGTAGTAGTTGACATCAATGACCTTATTCAAG 21776 Query 138988 TTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTG 139047 || || |||||||| ||| | | | | | ||| | ||| || | | Sbjct 21775 TTCCGGGTCACCACCTTGGTCACCT-CGTACAGC-TTC----TGGTAGTTGAACAC---- 21726 Query 139048 TCGTCGACGACGTCGACAAATTTGTTGA----CACAAATCGAGGCTATGTTGCACACCGC 139103 || | | || ||||| ||| || |||| || || | |||||||||||| Sbjct 21725 ---TCCAT--CCTCCACAAACTTGGGGAGGGCCACA----GACGCCAGGTTGCACACCGC 21675 Query 139104 CACTTCGTCGGG-GTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCG 139162 ||| || ||||| | || |||| || | ||| ||| ||||| || || | ||||| Sbjct 21674 CACCTCATCGGGCGACG-TGTACTCCATAATCTCGCAGCACAAGTTGCTTGAGCGGATCG 21616 Query 139163 TACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTG 139222 | || | || || || || || ||||| || || ||||| ||||| |||| Sbjct 21615 TGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCA 21556 Query 139223 TGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTAT----T 139278 ||| || || | || | || | ||| ||| | | || | || | Sbjct 21555 CGCCTGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCGTTGATCGTCT 21496 Query 139279 TGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACC 139337 || ||| || || | || ||||||||| ||||| || ||||| |||| | || Sbjct 21495 TG-CGCGCGC---GTCCCTCCTTCTCGTACTTCTCGTACAGCGTCTCGAACTCGT-CGCC 21441 Query 139338 GTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGC 139397 || || | || || | || || || || | || ||| ||| ||||| Sbjct 21440 CCAGCACTCGTAGAGTCCGGGGGCCTCGTTGGGGCAGAACAGGCTCCACTTGCCATTCGC 21381 Query 139398 CTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTT 139457 || |||||| ||||||||||||| || | ||||| |||| | | ||| |||||||| Sbjct 21380 CTCCACGCGCTTCATGAACAGATCGGGGACCCACAGAGCGTAAAACAAGTCGCGCGCGCG 21321 Query 139458 CTT-ATCTTCCGAACCCATG----TTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCG 139512 | | || || || || ||||| || | ||||| || || ||||| ||| Sbjct 21320 GTGCAGCT--CGTTACCGTGATTCTTACG---CAGCTCCAGGAACTCGAACACGTCGGCG 21266 Query 139513 TGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TGATCGACG 139569 ||||| || ||||| |||||||| | | ||||| || ||||| || || || || Sbjct 21265 TGCCACGGCTCCAGGTAGATGGCGAACGATCCTTTGCGCTTGCCTCCGCCCTGGTCCACA 21206 Query 139570 TGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTG 139629 | || | | | ||||| || | || ||| || | ||| | | || |||||| Sbjct 21205 TAGCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTC 21146 Query 139630 GTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCG 139689 |||| |||||| ||||| || |||| || || | | | ||||| || || ||| Sbjct 21145 GTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTAATGCCAATACCTCCG 21086 Query 139690 CCAAATTTGGATATTAAAACGCAATCGCGTAAT-GTCTCGTATATACCTCTTATGCTGTC 139748 | | ||||| || | |||| | || | | || ||||| || || || ||| Sbjct 21085 GCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTC 21027 Query 139749 GTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAA 139808 ||||||||| | | ||| ||||| ||||| || ||||| | ||||||||| ||| Sbjct 21026 GTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAA 20967 Query 139809 CAGAGTAGGACTCGCGTGCGT---GAACATTTGTTTCGACATCAATTCGTACGT 139859 || || || |||||||||| |||||| ||| ||||| | |||||||| Sbjct 20966 GAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGT---GACATGAGCTCGTACGT 20916 >seq6965 Length=79392 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 54159 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCTTCG 54218 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||||||||| ||||| || ||||| || || Sbjct 54219 GACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 54278 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 54279 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 54338 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| ||||| |||| |||| || ||| Sbjct 54339 ATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGCGTGGTGGC 54386 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||| | || || || || || ||||| || || || | | Sbjct 54387 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCTTCG 54446 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||||||||| ||||| || ||||| || || Sbjct 54447 GACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 54506 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 54507 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 54566 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| ||||| |||| | ||||| || Sbjct 54567 ATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGTCTTCGCGGTGG 54613 >seq5367 Length=20193 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 |||||||||||| | || || || || || || || || ||||| || || | ||||| | Sbjct 8054 ATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCATCACGCTGGACGT-GGAGCCATC 7996 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || || || ||||| ||||| ||||| || || || || || Sbjct 7995 CGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCA 7936 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| || || || ||||| ||||| Sbjct 7935 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGA 7900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449846767194920