Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_022085.1 Length=76483 Score E Sequences producing significant alignments: (Bits) Value seq4443 134 7e-27 >seq4443 Length=35022 Score = 134 bits (148), Expect = 7e-27 Identities = 329/497 (66%), Gaps = 9/497 (2%) Strand=Plus/Minus Query 66304 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66363 |||| |||||| ||||||||| || | || | | ||||||||||| || ||||| ||| Sbjct 5551 GCCTTCATCGATGCTGAGCACGCCATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 5492 Query 66364 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66423 | ||| || || ||||||||| | ||||| | || ||||| |||| ||| Sbjct 5491 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCGCTGGAAATCGCGGAC 5432 Query 66424 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 66483 ||| || ||||| | | || | |||| || | ||| ||||||||| || ||| Sbjct 5431 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 5372 Query 66484 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 66543 || || |||||||| || || || || || ||| || | | ||||| ||||| || Sbjct 5371 CCACGTGCCGAGCTTGAGGGTGAAATGGGAGACCAGCAGATTGCGCTGCAGGCGCGACTG 5312 Query 66544 ATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 66600 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 5311 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 5254 Query 66601 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACC 66660 ||| | |||||| | ||| ||||| | |||| | || ||| | ||| | Sbjct 5253 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 5198 Query 66661 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 66720 || |||| || | || ||| | | ||||| || || ||| | || | || |||| Sbjct 5197 ACGTCGGGTGGTACAGCGTTGCGTTATTACGCGTCTGTGCGCCTTGACATTCGCCGCAAG 5138 Query 66721 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 66780 | | |||||||| || || |||||||||| || |||||||| | |||| Sbjct 5137 ACGGCTATCAAGGAAGGTGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 5078 Query 66781 AACAAGCTGGCCCCGCC 66797 ||||||||||| |||| Sbjct 5077 AACAAGCTGGCATCGCC 5061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244593851884676