Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_022330.1 Length=76586 Score E Sequences producing significant alignments: (Bits) Value seq4443 138 6e-28 >seq4443 Length=35022 Score = 138 bits (152), Expect = 6e-28 Identities = 330/497 (66%), Gaps = 9/497 (2%) Strand=Plus/Minus Query 66284 GCCTACATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGAC 66343 |||| |||||| ||||||||| || | || || | ||||||||||| || ||||| ||| Sbjct 5551 GCCTTCATCGATGCTGAGCACGCCATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 5492 Query 66344 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66403 | ||| || || ||||||||| | ||||| | || ||||| |||| ||| Sbjct 5491 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCGCTGGAAATCGCGGAC 5432 Query 66404 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 66463 ||| || ||||| | | || | |||| || | ||| ||||||||| || ||| Sbjct 5431 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 5372 Query 66464 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 66523 || || |||||||| || || || || || ||| || | | ||||| ||||| || Sbjct 5371 CCACGTGCCGAGCTTGAGGGTGAAATGGGAGACCAGCAGATTGCGCTGCAGGCGCGACTG 5312 Query 66524 ATGTCGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACG 66580 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 5311 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 5254 Query 66581 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACC 66640 ||| | |||||| | ||| ||||| | |||| | || ||| | |||| | Sbjct 5253 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 5198 Query 66641 ACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 66700 || |||| || | || ||| | | ||||| || || ||| | || | || |||| Sbjct 5197 ACGTCGGGTGGTACAGCGTTGCGTTATTACGCGTCTGTGCGCCTTGACATTCGCCGCAAG 5138 Query 66701 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAG 66760 | | |||||||| || || |||||||||| || ||||| || | |||| Sbjct 5137 ACGGCTATCAAGGAAGGTGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 5078 Query 66761 AACAAGCTGGCCCCGCC 66777 ||||||||||| |||| Sbjct 5077 AACAAGCTGGCATCGCC 5061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244923415575013