Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5367 132 3e-26 seq6965 120 2e-22 seq9025 102 5e-17 seq8636 100 2e-16 >seq5367 Length=20193 Score = 132 bits (146), Expect = 3e-26 Identities = 148/198 (75%), Gaps = 10/198 (5%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| |||||||| || |||| | || || || ||||| || ||||||| Sbjct 7865 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 7924 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGAC----- 34902 |||| || |||||||| |||| | || |||||||| | ||||| || ||||| Sbjct 7925 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 7984 Query 34903 GGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 ||||| ||| | | ||| || || | || |||||||||||||| |||||||| Sbjct 7985 CAATGCTGTCGGAT-----GGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTT 8039 Query 34963 TACAAAGATCTGCATGAT 34980 ||||||||||||||||| Sbjct 8040 CACAAAGATCTGCATGAT 8057 >seq6965 Length=79392 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| ||||| || |||| | || Sbjct 54371 CAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTC 54312 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||||||||||| || |||||||| | || | || |||||||| Sbjct 54311 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 54252 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || ||| | ||||| || | ||| || || | || || || Sbjct 54251 TTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGT 54192 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| | ||||| ||||||||||||||| Sbjct 54191 CTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 54158 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| ||||| || |||| | || Sbjct 54599 CAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTC 54540 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||||||||||| || |||||||| | || | || |||||||| Sbjct 54539 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 54480 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || ||| | ||||| || | ||| || || | || || || Sbjct 54479 TTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGT 54420 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| | ||||| ||||||||||||||| Sbjct 54419 CTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 54386 >seq9025 Length=46235 Score = 102 bits (112), Expect = 5e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 12809 CAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTC 12868 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||| ||||| || |||||||| |||| | || |||||||| Sbjct 12869 CTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 12928 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || || | ||||| || | ||| || || | || || || Sbjct 12929 TTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAAGTGATCGT 12988 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| | ||||| || |||||||||||| Sbjct 12989 CTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 13022 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 13037 CAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTC 13096 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||| ||||| || |||||||| |||| | || |||||||| Sbjct 13097 CTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 13156 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || || || | ||||| || | ||| || || | || || || Sbjct 13157 TTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAAGTGATCGT 13216 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| | ||||| || ||||||||||| Sbjct 13217 CTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 13249 >seq8636 Length=68535 Score = 100 bits (110), Expect = 2e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||||| |||||||| ||||| |||||||| || |||| | || Sbjct 28137 CAGCACCAGGTGCAGCGTGCTTTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTC 28078 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||||| ||||| |||||||||||||| || |||||||| |||| Sbjct 28077 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 28033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325656920765141