Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq4443 138 5e-28 >seq4443 Length=35022 Score = 138 bits (152), Expect = 5e-28 Identities = 330/497 (66%), Gaps = 9/497 (2%) Strand=Plus/Minus Query 64830 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 64889 |||| |||||| ||||||||| || | || | | ||||||||||| || ||||| ||| Sbjct 5551 GCCTTCATCGATGCTGAGCACGCCATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 5492 Query 64890 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 64949 | ||| || || ||||||||| | ||||| | || ||||| |||| ||| Sbjct 5491 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCGCTGGAAATCGCGGAC 5432 Query 64950 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 65009 ||| || ||||| | | || | |||| || | ||| ||||||||| || ||| Sbjct 5431 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 5372 Query 65010 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 65069 || || |||||||| || || || || || ||| || | | ||||| ||||| || Sbjct 5371 CCACGTGCCGAGCTTGAGGGTGAAATGGGAGACCAGCAGATTGCGCTGCAGGCGCGACTG 5312 Query 65070 ATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACG 65126 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 5311 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 5254 Query 65127 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACC 65186 ||| | |||||| | ||| ||||| | |||| | || ||| | |||| | Sbjct 5253 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 5198 Query 65187 ACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATC 65246 || |||| || | || ||| | | ||||| || || ||| | || | || |||| Sbjct 5197 ACGTCGGGTGGTACAGCGTTGCGTTATTACGCGTCTGTGCGCCTTGACATTCGCCGCAAG 5138 Query 65247 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 65306 | | |||||||| || || |||||||||| || |||||||| | |||| Sbjct 5137 ACGGCTATCAAGGAAGGTGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 5078 Query 65307 AACAAGCTGGCCCCGCC 65323 ||||||||||| |||| Sbjct 5077 AACAAGCTGGCATCGCC 5061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237321053164909