Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq9025 100 2e-16 seq6965 87.8 1e-12 >seq9025 Length=46235 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||| || ||||| || || || || ||||| || || Sbjct 13023 CCACCGCGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 13082 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || |||||||| | |||| | ||||| || ||||| Sbjct 13083 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 13142 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | ||| || || ||| | || | | ||| || | || || Sbjct 13143 ATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACG 13202 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | ||| || || ||||| || || || || || || |||||||| || Sbjct 13203 TCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 13252 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||||| || ||||| || || || || ||||| || || | |||||| Sbjct 12806 ACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 12865 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || |||||||| | |||| | ||||| || ||||| || || || || Sbjct 12866 GTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTT 12925 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| || || ||| | || | | ||| || | || || || | ||| || Sbjct 12926 GTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAAGTGAT 12985 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || || || || |||||||| Sbjct 12986 CGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 13021 >seq6965 Length=79392 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||||| || || || || || || || ||||| || || | |||||| Sbjct 54602 ACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 54543 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || ||||| || | ||||| | ||||| || || || || || || || Sbjct 54542 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTT 54483 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| || || || | || | | ||| ||| | || || || || || || Sbjct 54482 GTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGAT 54423 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || ||||| |||||||| Sbjct 54422 CGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 54387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385176763169499