Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq9025 120 6e-22 seq6965 118 2e-21 >seq9025 Length=46235 Score = 120 bits (132), Expect = 6e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | |||||| || | ||| || || || || ||||| || || || || Sbjct 12793 TACCGCCACGTAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGC 12852 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | |||||| || || || || ||||| || || || | || || || || | Sbjct 12853 TCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCG 12912 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || |||||||| |||||||| || ||||| ||||| || |||| || || || Sbjct 12913 GGATGCCTTCCTTGTCTTGAATTTTCTGCTTC-ACATTGTCGATCGAGTCCGACGGCTCC 12971 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| ||||||||||| ||||| ||||| || || |||||||| Sbjct 12972 ACGTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 13021 Score = 120 bits (132), Expect = 6e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | ||| || || || || ||||| || || || || Sbjct 13023 CCACCGCGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTC 13082 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||| || || || || ||||| || || || | || || || || || Sbjct 13083 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGG 13142 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| |||||||| || ||||| ||||| || |||| || || || || Sbjct 13143 ATGCCTTCCTTGTCTTGAATTTTCTGCTTC-ACATTGTCGATCGAGTCCGACGGCTCCAC 13201 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||||||||| ||||| ||||| || || |||||||| Sbjct 13202 GTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 13249 >seq6965 Length=79392 Score = 118 bits (130), Expect = 2e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | |||||| ||||| || ||||| || || || || || | | ||| Sbjct 54602 ACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 54543 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || || ||||| | | || || || ||||| || |||||||| Sbjct 54542 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTT 54483 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 ||||| || || ||||| || || || |||| || ||| || || |||| || | Sbjct 54482 GTCTTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGA 54424 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || ||||||||||| ||||| |||||||| Sbjct 54423 TCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 54387 Score = 116 bits (128), Expect = 7e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| ||||| || ||||| || || || || || | | |||| Sbjct 54373 CGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 54314 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| | | || || || ||||| || |||||||| Sbjct 54313 TCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTG 54254 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| || || ||||| || || || |||| || ||| || || |||| || || Sbjct 54253 TCTTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGAT 54195 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || ||||||||||| ||||| |||||||| Sbjct 54194 CGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 54159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981713492444221