Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq6965 100 7e-16 seq9025 91.5 3e-13 >seq6965 Length=79392 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||| | || || || |||||||| |||| ||||| ||| ||| Sbjct 54390 CAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 54449 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| || || ||||| || ||||| || || ||| || Sbjct 54450 TCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAG 54509 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 54510 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 54569 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| |||||||| || ||||| || || | ||||| Sbjct 54570 CAGAAGGAGTCTACCCTGCACCTGGTGCTGCGTCTTCG 54607 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||| | || || || |||||||| |||| ||||| ||| ||| Sbjct 54162 CAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGCTGGACGTGGAGCCTTCGGAC 54221 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| || || ||||| || ||||| || || ||| || Sbjct 54222 TCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAG 54281 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 54282 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 54341 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| || ||||| || Sbjct 54342 CAGAAGGAGTCTACCCTGCACCTGGT 54367 >seq9025 Length=46235 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||||||||| ||||| || ||| | |||| || ||||| Sbjct 12997 ACGGGCAAGACGATCACTTTGGACGTGGAGCCGTCGGACTCGATCGACAATGTGAAGCAG 12938 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| || ||||| || ||| ||| || | || || ||||| || ||| Sbjct 12937 AAAATTCAAGACAAGGAAGGCATCCCGCCTGACCAGCAGCGCCTGATTTTCGCTGGCAAG 12878 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || || || | || || ||| |||||| ||||||| ||||| || || ||| Sbjct 12877 CAGCTTGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCAACGCTACAC 12818 Query 206374 CTTGT 206378 || || Sbjct 12817 CTGGT 12813 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||||||||| ||||| || ||| | |||| || ||||| Sbjct 13225 ACGGGCAAGACGATCACTTTGGACGTGGAGCCGTCGGACTCGATCGACAATGTGAAGCAG 13166 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| || ||||| || ||| ||| || | || || ||||| || ||| Sbjct 13165 AAAATTCAAGACAAGGAAGGCATCCCGCCTGACCAGCAGCGCCTGATTTTCGCTGGCAAG 13106 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || || || | || || ||| |||||| ||||||| ||||| || || ||| Sbjct 13105 CAGCTTGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCAACGCTACAC 13046 Query 206374 CTTGT 206378 || || Sbjct 13045 CTGGT 13041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181683930747919