Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6149 179 4e-40 seq6965 100 3e-16 seq9025 96.9 3e-15 >seq6149 Length=26765 Score = 179 bits (198), Expect = 4e-40 Identities = 626/964 (65%), Gaps = 25/964 (3%) Strand=Plus/Minus Query 147459 GGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTT 147517 ||| | ||||||||| ||||| || ||| ||| |||| || || |||||| || || | Sbjct 21701 GGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACG-TGTACTCCATAATCT 21643 Query 147518 CGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGC 147577 || ||||| |||||| | || || | || ||||| || || || ||| Sbjct 21642 CGCAGCACAAGTTGCTTGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGG 21583 Query 147578 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---A 147634 |||||| ||| | |||||| |||| |||| ||||| | |||| || | ||| | Sbjct 21582 CCGCGTCCTTGTACAGCATGAACGGCACGCCTGTCTCAATCTGCGCGTCCAGGATGGCGA 21523 Query 147635 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 ||| ||| | ||| || | | || || ||| ||||| || |||||| || Sbjct 21522 ACCA---CAGCTGCTGGGCGTTGATCGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTCT 21466 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGAC 147754 |||||| | ||| ||||||||||| |||| ||| || ||||| || | || | Sbjct 21465 CGTACAGCGTCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCGTTGGGGC 21406 Query 147755 ACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA 147814 | | ||| |||| || | | ||| | ||||| ||| |||||||| || ||||||| Sbjct 21405 AGAACAGGCTCCACTTGCCATTCGCCTCCACGCGCTTCATGAACAGATCGGGGACCCACA 21346 Query 147815 GCGCGTACATAAGATCGCGCGCTT--TGCAATCCTCGGCGCCCATGTTGCGTTTCAAATT 147872 | ||||| | | |||||||| |||| |||| || || | | | | | Sbjct 21345 GAGCGTAAAACAAGTCGCGCGCGCGGTGCAG--CTCGTTACCG-TGATTCTTACGCAGCT 21289 Query 147873 --AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 | | || | | | | |||||||||||| || || | ||||| ||| | || ||||| Sbjct 21288 CCAGGAACTCGA-ACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGATCCTTTG 21230 Query 147931 CGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987 ||||| |||||||||||| |||| ||| || ||| ||| || || | || |||||| Sbjct 21229 CGCTTGCCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGG 21170 Query 147988 TCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG 148047 | ||| | | | ||||| ||| ||| | |||| ||| || | | | Sbjct 21169 ATGATCCCGTTGGATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTG 21110 Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA---T 148104 |||| ||| |||||| || ||| | |||| || ||| ||||| | || | | Sbjct 21109 TGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCACT-GCTTGAGCGT 21051 Query 148105 GTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATT 148164 ||| ||| ||||| || || ||||| | | | | |||| || ||||| ||| Sbjct 21050 GTC--GTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGC 20993 Query 148165 TGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGA 148224 |||||| | |||| || || || || ||||| ||||||||||||| || | || Sbjct 20992 TGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGAACATCTGT 20933 Query 148225 CTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCG 148284 ||| | ||||| | | || | | |||||| | ||| || |||||||| Sbjct 20932 GACATGAGCTCGTACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGGATACCCAGCGCC 20873 Query 148285 ACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATAT 148344 |||||||||| ||| ||||| || || || | || | ||| | || || || Sbjct 20872 ACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTGCCGTTCACGCGGAAGAGGTAG 20813 Query 148345 CCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATG 148404 || ||||| |||||| | || ||||| | ||| ||||| || | |||| |||| Sbjct 20812 CCCCGCTCGAGCGTTTTGAAGCCGAAGTAGTCGTACTCAAAGTCCCGGTCGTGGATGATG 20753 Query 148405 GCCG 148408 |||| Sbjct 20752 GCCG 20749 >seq6965 Length=79392 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| || | | | ||||| || || |||||||||||||||| || Sbjct 54380 ACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 54321 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| | |||||| || || ||||| ||||| Sbjct 54320 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCC 54261 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||||| || |||| | || | | || | |||||||| || | Sbjct 54260 TTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAG 54201 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||| || || |||| || || | || ||||||||| Sbjct 54200 CGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 54158 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| || | | | ||||| || || |||||||||||||||| || || Sbjct 54601 CGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 54542 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| | |||||| || || ||||| |||||||| || Sbjct 54541 TCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTG 54482 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || |||| | || | | || | |||||||| || | ||| | | Sbjct 54481 TCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATC 54422 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || |||| || || | || ||||||||| Sbjct 54421 GTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 54386 >seq9025 Length=46235 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| |||| ||||||| || || |||||||||||||||| || || Sbjct 12807 CGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCG 12866 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || || | | || || ||||| || || || || |||||||| || Sbjct 12867 TCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 12926 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || |||| | || | | || | ||||||||| || | || | | Sbjct 12927 TCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAAGTGATC 12986 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || |||| ||| || | ||| ||||||||| Sbjct 12987 GTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 13022 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| |||| |||| ||||||| || || |||||||||||||||| || Sbjct 13029 CGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 13088 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || || | | || || ||||| || || || || |||||| Sbjct 13089 CGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCT 13148 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || |||||| || |||| | || | | || | ||||||||| || | Sbjct 13149 TCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAA 13208 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || |||| ||| || | ||| |||||||| Sbjct 13209 GTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 13249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476557348892040