Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7165 125 6e-24 >seq7165 Length=36682 Score = 125 bits (138), Expect = 6e-24 Identities = 315/468 (67%), Gaps = 12/468 (3%) Strand=Plus/Plus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC-- 40922 ||||||||| || || || || || || |||| ||| |||||||| || || || || Sbjct 19654 AGGTGATCTCGGACCGGTCTACGGCTTCCAGTGGCGCCATTTTGGCGCCAAGTAC-ACGG 19712 Query 40923 ACTATGTACTCTGATTATACCAATAAAGGAATGGATCAA-TTACAGTGCGTTATAGATAC 40981 || ||| || | ||||| || | ||| |||| || |||| | | || || ||| Sbjct 19713 AC-ATGCACGCAGATTACACTGGACAGGGAGTGGACCAGCTTACTGAG-GTGATTCATAA 19770 Query 40982 GATTAAATCCGATCCCGATAG-CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACG 41040 | | | ||| |||||| | ||| || || | |||| ||||||||||| | || Sbjct 19771 GCTGCG-TACGAACCCGATGGACCGCCGGATCGTGTTGTCTGCGTGGAACCCTGCTGATC 19829 Query 41041 TACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTG 41100 | || ||||||| |||| || ||||| |||| || ||||| ||||| | || | Sbjct 19830 TGAATGAGATGGCACTGCCGCCGTGTCACATGTTCTGCCAGTTCTACGTGGCGGACGGCG 19889 Query 41101 AACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACA 41160 || |||| ||||| |||| || | || | || ||||| || || || |||||||||| Sbjct 19890 AATTGTCGTGTCAGATGTACCAGCGCTCGGCCGATATGGGCCTTGGTGTGCCGTTTAACA 19949 Query 41161 TAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTG 41220 | || || || || |||||||| | | ||||| || | | |||||||||| Sbjct 19950 TTGCAAGCTACGCGTTGCTCACGCGACTAGTGGCACAAGTGGCAGGGCTGAAACCTGGTG 20009 Query 41221 AATTTGTTCACACGTTA--GGAGATGGACATATTTACATTAATCACATAGAGCCGTTAAC 41278 ||||| || ||||||| || || | ||| | || | || ||| | ||||| | Sbjct 20010 AATTTATT--CACGTTATCGGTGACGCGCATGTGTATCTGAACCACGTTGAGCCTCTTCA 20067 Query 41279 AGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAA 41326 | | || || || || ||| | ||||| |||||||| | ||||| Sbjct 20068 AAAGCAGCTTACGCGTTCACCGCGGCCATTCCCAACGCTTCACATTAA 20115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397412215129195