Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq6149 140 1e-27 seq8697 84.2 7e-11 seq8320 84.2 7e-11 >seq6149 Length=26765 Score = 140 bits (154), Expect = 1e-27 Identities = 360/538 (67%), Gaps = 8/538 (1%) Strand=Plus/Plus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||| || || || ||| | | || |||||| || ||||||||| || || || || || Sbjct 21161 CGGGATCATCCCCATGCTGAGGGTCTTCAACGACACGGCTCGCTATGTGGACCAGGGCGG 21220 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG 255090 ||||| ||| |||| ||||| ||||||||||||||||||||||||||||| || || Sbjct 21221 AGGCAAGCGCAAAGGATCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGAC-GTGTTCG 21279 Query 255091 -GTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACA 255149 ||| | |||| | || ||| | |||| || ||| |||||| | | Sbjct 21280 AGTTCCTGGAGCTGCGTAAGAATCACGGTAACGAGCTGCACCGCGCGCGCGACTTGTTTT 21339 Query 255150 CCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGC 255208 |||| | ||| | ||||||||| ||| |||||||| ||| | | | |||||| Sbjct 21340 ACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGCGTGGAGGCGA-ATGGCAAGTGGAGC 21398 Query 255209 CTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAA 255268 || | || |||||| | ||||| || ||| | ||||| |||||||| || | Sbjct 21399 CTGTTCTGCCCCAACGAGGCCCCCGGACTCTACGAGTGCTGGGGCGACGAGTTCGAGACG 21458 Query 255269 CTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGAT 255327 ||||| | |||||||| | || || | || | | | | | ||| || || | Sbjct 21459 CTGTACGAGAAGTACGAGAAGGAGGGACGCGCGCGCAAGACGA-TCAACGCCCAGCAGCT 21517 Query 255328 CTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGA 255387 ||| | | || || | |||| | || || || |||||||| | || |||| || Sbjct 21518 GTGGTTCGCCATCCTGGACGCGCAGATTGAGACAGGCGTGCCGTTCATGCTGTACAAGGA 21577 Query 255388 C-CACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAACCTGT 255446 | | || |||| ||||||||| | ||| ||| ||||| ||| ||| ||| Sbjct 21578 CGCGGCCAACCGCA-AGTCGAACCAGCAGAACCTCGGCACGATCCGCTCAAGCAACTTGT 21636 Query 255447 GCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTC 255504 || |||||||| | | ||||||| | | |||||||| || |||||| ||||||| Sbjct 21637 GCTGCGAGATTATGGAGTACACGTCGCCCGATGAGGTGGCGGTGTGCAACCTGGCGTC 21694 >seq8697 Length=2752 Score = 84.2 bits (92), Expect = 7e-11 Identities = 100/135 (74%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 443763 CTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACT 443822 ||||||||||||| | |||||||| || || |||| ||||||| ||| ||||| || Sbjct 764 CTCCATCTTCTGGCTCAAAAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCT 705 Query 443823 GATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACAT 443882 ||||| ||||||||||| |||| |||||||| || || | ||| | | | | Sbjct 704 CATCAGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGA---AGTT 648 Query 443883 CGTGCACAAGCTGCC 443897 ||| |||||||||| Sbjct 647 GGTGAACAAGCTGCC 633 >seq8320 Length=26225 Score = 84.2 bits (92), Expect = 7e-11 Identities = 100/135 (74%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 443763 CTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACT 443822 ||||||||||||| | |||||||| || || |||| ||||||| ||| ||||| || Sbjct 764 CTCCATCTTCTGGCTCAAAAAGCGCGGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCT 705 Query 443823 GATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACAT 443882 ||||| ||||||||||| |||| |||||||| || || | ||| | | | | Sbjct 704 CATCAGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCGA---AGTT 648 Query 443883 CGTGCACAAGCTGCC 443897 ||| |||||||||| Sbjct 647 GGTGAACAAGCTGCC 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588152051333355