Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6149 188 9e-43 seq8697 107 2e-18 seq8320 107 2e-18 seq8199 86.0 8e-12 seq2904 86.0 8e-12 >seq6149 Length=26765 Score = 188 bits (208), Expect = 9e-43 Identities = 737/1141 (65%), Gaps = 37/1141 (3%) Strand=Plus/Minus Query 111044 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 111103 |||||| ||||||||||||| || ||||| | ||||| || | ||| ||||| || ||| Sbjct 21886 ATAAATGCATCCGCGAGACCCTGGACACCAATACCAACCGGGCGGTGGCGCATGTTGGAC 21827 Query 111104 TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 111163 || || || ||| ||||| || | || |||||||| || | || ||| Sbjct 21826 TTGCGTGCCTCCTCGACGGGGTAGTAGTTGACATCAATGACCTTATTCAAGTTCCGGGTC 21767 Query 111164 ACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 111223 || | ||| || | || | || || | || | || | || | || | ||| Sbjct 21766 ACCACCTTGGTCACCTCGTACAGCTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACA 21713 Query 111224 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 111283 |||| || ||||| | || |||| ||||| || ||| |||||| |||||| Sbjct 21712 AACTTGGGGAGGGCCACAGACGCCAGGTTGCACACCGCCACCTCATCGGGCGACGTGTAC 21653 Query 111284 TCTAAAATTTCTGTACATAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 || | ||| || || |||||| || | ||||| || | |||| ||||| Sbjct 21652 TCCATAATCTCGCAGCACAAGTTGCTTGAGCGG---ATCGTGCCGAGGTTCTGCTGGTTC 21596 Query 111341 CTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAT 111400 ||| |||| ||| |||||||| |||||| | ||| || ||||| |||| | Sbjct 21595 GACTTGCGGTTGGCCGCGTCCTTGTACAGCATGAACGGCACGCCTGTCTCAATCTGCGCG 21536 Query 111401 TTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCC 111457 | || || || ||| || | || | || | | | ||| || ||||||||| Sbjct 21535 TCCAGGATGGCGAACCA--CAGCTGCTGGGCGTTGATCGTC-TTGCGCGCGCGTCCCTCC 21479 Query 111458 GCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGG 111516 ||||||||| ||| || | || ||||| || ||| | || ||| |||| || || Sbjct 21478 TTCTCGTACTTCTCGTACAGCGTCTCGAACTCGTCGCCC-CAGCACTCGTAGAGTCCGGG 21420 Query 111517 TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAG 111576 |||| || || ||||| || ||| | ||| |||| || ||||||||||| || Sbjct 21419 GGCCTCGTTGGGGCAGAACAGGCTCCACTTGCCATTCGCCTCCACGCGCTTCATGAACAG 21360 Query 111577 GTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGT 111635 || || | |||||| | |||| | || | | | | || | |||| ||| || | Sbjct 21359 ATCGGGGACCCACAGAGCGTAAAACAAGTCGCGCGCGCGGTGCAGC-TCGTTACCGTGAT 21301 Query 111636 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 | || | ||| |||||||| | | || |||||||| ||||| || |||| |||| Sbjct 21300 TCTTACGCAGCTCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGA 21241 Query 111696 TAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 111752 ||||| || || | || | || | |||||||| || ||| |||| || || | Sbjct 21240 ACGATCCTTTGCGCTTGCCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTGAAGACCC 21181 Query 111753 GAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTG 111811 ||||| || || || || | ||| || || || || || || || | || || Sbjct 21180 TCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGTGCCGCGGAT-GTAGCTGTTCGTG 21122 Query 111812 GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 111871 || | | | || || || |||||||| || |||||||| ||||| ||| ||| Sbjct 21121 GCGCGGATGTTGTGCATACTAATGCCAATACCTCCGGCCCACTTGGAGATGCACGCGCAC 21062 Query 111872 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 111931 | | | || || | || || || | || ||||| |||| |||| | |||||||| Sbjct 21061 TGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGCAGGAAGCAC 21002 Query 111932 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---AATG 111988 |||| |||||| | || || || || || ||||| || || || ||||| || | Sbjct 21001 GACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAG 20942 Query 111989 AACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGG 112048 ||||| || ||||| ||||| || | || | | | ||||||| | |||| Sbjct 20941 AACAT---CTGTGACATGAGCTCGTACGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGG 20885 Query 112049 ATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGC 112108 || || | || || ||||||| ||| | ||| ||| |||| || |||| | | Sbjct 20884 ATACCCAGCGCCACGCGCATGATCATCTGCTGGGGGCGCTCCACGACCTTGCCGTTCA-- 20827 Query 112109 CGTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || ||||| |||| | ||| || ||||||| || ||||| | | ||| |||||| Sbjct 20826 CGCGGAAGAGGTAGCCCCGCTCGAGCGTTTTGAAGCCGAAGTAGTCGTACTCAAAGTCCC 20767 Query 112167 G 112167 | Sbjct 20766 G 20766 >seq8697 Length=2752 Score = 107 bits (118), Expect = 2e-18 Identities = 348/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || ||||||||||||||||||||||| || | || || | ||||| Sbjct 381 TACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCATC 440 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGAC 122488 |||| || || |||||| |||| | || || |||||| | | || | || | Sbjct 441 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACGCACCC-AGCGAGTACAAC-AGGC 498 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 | || | ||| |||| ||||| | | |||| | |||||||||| ||||| || | Sbjct 499 GGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 558 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| | || | |||| | | ||||||| | || || || |||||| |||| Sbjct 559 CGGGGAGGGAATCACTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 618 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAA 122663 | | | ||| || || | || ||| || | | | | |||| | || Sbjct 619 GCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAA 673 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 ||| ||| | ||||| || ||| || || || || ||||||| ||||| ||||| Sbjct 674 GTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 733 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 ||| || ||||| || | ||| | || | |||||| || || |||||||| || ||||| Sbjct 734 GAGGCCGCGCTTTTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTC 793 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTT-GCATCAAACCATT 122842 ||| || ||||| | ||||| || | | |||| ||| || | ||| |||| | Sbjct 794 CACGGCAGCGAACGCCAGCAGGCGCTCCGGGTAGGA-CGACACGCGAGGGTCACACCACT 852 Query 122843 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 | | ||||| ||||||||||| | || || | || | |||||| Sbjct 853 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 901 >seq8320 Length=26225 Score = 107 bits (118), Expect = 2e-18 Identities = 348/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || ||||||||||||||||||||||| || | || || | ||||| Sbjct 381 TACTCGCCCACGCGCTTCTCAAAGAAGTTGGTCTTGCCCTGTAGCGAGATCATGTCCATC 440 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATG--GGTGGCACCCCAACTTGTTTGAGGAGAC 122488 |||| || || |||||| |||| | || || |||||| | | || | || | Sbjct 441 CAGTCGAACGGGTTCTTCACGTTGTAGATCTTGGACGCACCC-AGCGAGTACAAC-AGGC 498 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 | || | ||| |||| ||||| | | |||| | |||||||||| ||||| || | Sbjct 499 GGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCAGAGTTCATGCCGATCAGCTCCA 558 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| | || | |||| | | ||||||| | || || || |||||| |||| Sbjct 559 CGGGGAGGGAATCACTCACGAACTCGTGCTCAATCACCACAGCGTCACGCACGATCGCGT 618 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAA 122663 | | | ||| || || | || ||| || | | | | |||| | || Sbjct 619 GCACGCGGCTCTCCGGCAGCTTGT---TCAC-CAACTTCGAGTACATGAGGCACG-CGAA 673 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 ||| ||| | ||||| || ||| || || || || ||||||| ||||| ||||| Sbjct 674 GTCCGTGTGCATGCCCTCGTCCCGGCTGATGAGCTCGTTCGAGAAGCTCAGACCAGGCAT 733 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 ||| || ||||| || | ||| | || | |||||| || || |||||||| || ||||| Sbjct 734 GAGGCCGCGCTTTTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAAATGCCCTC 793 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTT-GCATCAAACCATT 122842 ||| || ||||| | ||||| || | | |||| ||| || | ||| |||| | Sbjct 794 CACGGCAGCGAACGCCAGCAGGCGCTCCGGGTAGGA-CGACACGCGAGGGTCACACCACT 852 Query 122843 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 | | ||||| ||||||||||| | || || | || | |||||| Sbjct 853 TGAGCGCCCAGCGGGCCTTCTTCTCCACGCACGGGATCGTCTCGATGGC 901 >seq8199 Length=10525 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 5181 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 5240 Query 145342 CAGGTAGGAGCT 145353 | |||||||||| Sbjct 5241 CCGGTAGGAGCT 5252 >seq2904 Length=53647 Score = 86.0 bits (94), Expect = 8e-12 Identities = 215/321 (67%), Gaps = 17/321 (5%) Strand=Plus/Minus Query 182487 GGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATCATTATCG 182546 |||||||| ||||| || || | || ||||||||||||||| || || |||| || Sbjct 40518 GGCCAGAATGTGTGGAACAGGTTGAAGAGGAGACCCTTGATGTGCGAGCCGTCATGGTCC 40459 Query 182547 GCATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAA------CATC---TTGG 182597 ||||||||| || | ||| ||||| || |||| | | || | | Sbjct 40458 TGATCTGTCATGGCAATCACACGCCCATAACGCAGTTTTTGACGTGCCTCCTCCGTTCCG 40399 Query 182598 TAGT-CTTTTCCTTGTTGAAGACCAAGGATCTTCTTGAGATCATTGAACTCCTGG---TT 182653 |||| || ||| || || ||||||| ||| | || | ||||| || || Sbjct 40398 TAGTGCTCGTCCATGCGGA-GACCAAGAATCGTACAAAGGTGCGCAAACTC--GGCATTT 40342 Query 182654 TGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAA 182713 | | || |||| |||| | || || || |||||| | ||| ||||| || || || Sbjct 40341 TTACCTA-GCTGCACCACAGTCGCATCACGCACATTCAGAAGTTTGCCGCGGAGGGGAAA 40283 Query 182714 CACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGA 182773 |||||||||||||||||| ||||| || | ||||| || || || || | || || || Sbjct 40282 CACACCGTAGTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGA 40223 Query 182774 ATCACCCTCCGTGACAATGAG 182794 |||||| || || | ||| || Sbjct 40222 ATCACCTTCAGTCAAAATTAG 40202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627961040234400