Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6149 248 1e-60 seq2904 96.9 4e-15 >seq6149 Length=26765 Score = 248 bits (274), Expect = 1e-60 Identities = 1118/1749 (64%), Gaps = 66/1749 (4%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| |||||||||||||||| ||||||||| || | ||||| || | |||||| Sbjct 22565 GTAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTCAACTT 22506 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 || || || | ||| | ||||| ||| || ||| || || Sbjct 22505 ACTGATCGTCGGGTCGGCAATGTGAATGTTCAACGACTGGCTCTGGCAAATGTAGGCGCC 22446 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 || ||||||| || || | ||| ||||| ||||||||||||||| ||| |||| Sbjct 22445 ACGGTCCGCCGACAGGTCCAACACGGCCTTCTGCTTGATTTCCCACACTGTCTTGTACTT 22386 Query 118022 GTTCTTAATATCATCTGGGATA---TCCACGATATTTTGGATGGATCCACCCGCCTTGAC 118078 | ||| | | || || || | ||| || || | ||| ||||| | | Sbjct 22385 CTCCTTGACCTGGTCCGGAATGGATTTCACC---TTCTGCACGGAGCCACCGTCAG---C 22332 Query 118079 CATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG 118135 || || | || || || | ||||| || | || | || || | || ||| Sbjct 22331 CAGGATCTGGTTGCGCACCTCAGGCGTCCAGATTCCCAGCTCGATCAGCTCTTTCATGAG 22272 Query 118136 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 118195 | ||| || || | |||||||| || || ||| | || || || | ||| Sbjct 22271 GTACTTGTTCACGATCGTGAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGT 22212 Query 118196 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGG 118255 || ||||| | | |||| ||||| ||||| || || || || || || |||||||| || Sbjct 22211 ATACGGCTCGATGGACTCGTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGG 22152 Query 118256 TGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCA 118315 |||| ||| || ||| || | || | | | | | |||||||| || ||| Sbjct 22151 AGCCACGAGGAGCGAGTTGCGTATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGTCCA 22092 Query 118316 GTCGTA-------GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 118368 ||| | | || | ||| | ||| ||||| || ||||||| |||||| | Sbjct 22091 GTCCCACAAACCGGAAGA-CGGGGTCACGCCC---CACATGTCGAACTGGAAGATACCCT 22036 Query 118369 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGC 118428 | || ||||| |||| || ||||| || |||||| ||| || | || Sbjct 22035 TGCTGGCAGGCGAGCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTCCATCG 21976 Query 118429 TCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT--TGCCTT--- 118483 || ||| | | |||| || || || || || ||| ||||| || || Sbjct 21975 ACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATG------TTCATGTTGAGTTCAC 21922 Query 118484 GGCCTCGTCGGAA-TCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTG 118540 || || | || || ||||| ||| || | |||||| ||||||||||||| || Sbjct 21921 GGGCTTGCGGGCTCTCGAACGCATAGTT--CATGAGGATAAATGCATCCGCGAGACCCTG 21864 Query 118541 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATA 118600 |||||| | |||| ||||| || | ||| || ||||| || || ||| ||||| || Sbjct 21863 GACACCAATACCAACCGGGCGGTGGCGCATGTTGGACTTGCGTGCCTCCTCGACGGGGTA 21804 Query 118601 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 118660 | || ||| || ||| |||| | || ||| || ||||| || | || | || Sbjct 21803 GTAGTTGACATCAATGACCTTATTCAAGTTCCGGGTCACCACCTTGGTCACCTCGTACAG 21744 Query 118661 CTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 118720 ||| | ||| | || | || | || | ||| |||| || ||||| | ||||| Sbjct 21743 CTTCTGGTAGTTGAAC-----ACTC-CATCCTCCACAAACTTGGGGAGGGCCACAGACGC 21690 Query 118721 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT 118780 ||| || ||||| | |||||| |||||||| ||||| || ||||||||| Sbjct 21689 CAGGTTGCACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAGTT 21630 Query 118781 ---TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 118837 ||| | || ||||| | ||||| || || ||||| ||| ||| ||||| Sbjct 21629 GCTTGAGCGG---ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTT 21573 Query 118838 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATC 118897 ||| |||||| | ||| || ||||| | || | | || || || ||| || | Sbjct 21572 GTACAGCATGAACGGCACGCCTGTCTCAATCTGCGCGTCCAGGATGGCGAACCA--CAGC 21515 Query 118898 GGCAGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGG 118953 || | ||| | | | ||| || || ||||| | ||||||||| ||| || | Sbjct 21514 TGCTG--GGCGTTGATCGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTCTCGTACAGCG 21457 Query 118954 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAG 119013 || ||||| || ||| | ||| |||| || || |||| | |||||||| || Sbjct 21456 TCTCGAACTCGTCGCCCCAGCACTCGTAGAGTCCGGGGGCCTCGTTGGGGCAGAACAGGC 21397 Query 119014 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 119073 ||| | ||| | |||| || ||||||||||| || || |||| ||| || || | | Sbjct 21396 TCCACTTGCCATTCGCCTCCACGCGCTTCATGAACAGATCGGGGACCCACAGAGCGTAAA 21337 Query 119074 AGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 119132 | | || || || | || | || | || ||||| ||||| ||||| || || Sbjct 21336 ACAAGTCGCGCGCGCGGTGCAGC-TCGTTACCGTGATTCTTACGCAGCTCCAGGAACTCG 21278 Query 119133 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCA 119189 | | || ||||||||||| |||||||| | |||| || || || || | || Sbjct 21277 AACACGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGATCCTTTGCGCTTGCCTCCG 21218 Query 119190 GCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCG 119249 |||||| ||||| | || ||| |||| || || | ||||| || ||||| || | | Sbjct 21217 CCCTGGTCCACATAGCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGGATGATCCCGTTG 21158 Query 119250 GATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATA 119309 ||| || || || || || || || |||| | || | ||| || || Sbjct 21157 GATGATCCGTTCGTGCCGCGGATGTAGCTGTTCGTGGCGCGGATGTTGTGCATACTAATG 21098 Query 119310 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCA 119369 |||||||| || |||||||| ||||| |||||||| | |||| || |||| || || Sbjct 21097 CCAATACCTCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCC 21038 Query 119370 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTA 119429 || |||||||| ||| | || | |||||||| ||||| || || | || || Sbjct 21037 TCAATCGAGTCGTCCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGTG 20978 Query 119430 CCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTA 119488 || ||||| ||||| || || |||||||| | || | || | || ||||| ||||| Sbjct 20977 CCGGCGTTAAAGAGCGTGGGCGTCGCGTGCGTAAAGA-ACATCTGTGACATGAGCTCGTA 20919 Query 119489 GGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 || | || | || | ||||||| | ||| ||||| | || || ||||| | ||| Sbjct 20918 CGTGTGCAGTGCCGCCTGGATGTCTTGCTTGTGGATACCCAGCGCCACGCGCATGATCAT 20859 Query 119549 GTATTGGGG 119557 | ||||| Sbjct 20858 CTGCTGGGG 20850 >seq2904 Length=53647 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 179920 AGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCG 179979 || ||| |||| | ||||| || ||||| | || || ||||| || ||||||||| Sbjct 40335 AGCTGCACCACAGTCGCATCACGCACATTCAGAAGTTTGCCGCGGAGGGGAAACACACCG 40276 Query 179980 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 180039 ||||||||||| |||||||| | |||||||| || || || | ||| || |||||||| Sbjct 40275 TAGTGATCACGTCCAACCACTGCCAGACCAGCCACGGCCAGTGCCTTGGCAGAATCACCT 40216 Query 180040 TCCGTCACGATGAGCG 180055 || |||| || |||| Sbjct 40215 TCAGTCAAAATTAGCG 40200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618365324552840