Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6149 194 2e-44 seq2616 91.5 2e-13 >seq6149 Length=26765 Score = 194 bits (214), Expect = 2e-44 Identities = 1110/1752 (63%), Gaps = 70/1752 (4%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| ||||||||||||| | ||||| || | ||||||| | | | Sbjct 20849 CCCCCAGCAGATGATCATGCGCGTGGCGCTGGGTATCCACAAGCAAGACATCCAGGCGGC 20908 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCT 104337 || | || ||||| ||||| || |||||| || ||||| || || || || Sbjct 20909 ACTGCACACGTACGAGCTCATGTCACA---GATGTTCTTTACGCACGCGACGCCCACGCT 20965 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 ||| || || || || || | || || |||| |||||||| | |||| |||| Sbjct 20966 CTTTAACGCCGGCACGCCGCGTCCGCAGCTGTCGTCGTGCTTCCTGCTGGCCATGCAGGA 21025 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 ||||| || | || || || | || || | | |||| ||| ||||| |||||||| Sbjct 21026 CGACTCGATTGAGGGCATTTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGC 21085 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGA 104516 || |||||||| || || || | | | |||| || | || || || || | Sbjct 21086 CGGAGGTATTGGCATTAGTATGCACAACATCCGCGCCACGAACAGCT-ACATCCGCGGCA 21144 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || || ||| | || || || || ||||| | || || |||| ||| || |||| Sbjct 21145 CGAACGGATCATCCAACGGGATCATCCCCATGCTGAGGGTCTTCAACGACACGGCTCGCT 21204 Query 104577 ATGTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 |||| | || | | ||| || || ||||| |||| |||| || ||||| |||| Sbjct 21205 ATGTGGACCAGGGCGGAGGCAAGCGCAAAGGATCGTTCGCCATCTACCTGGAGCCGTGGC 21264 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| || | | |||||||| ||| ||||| || || ||| |||| | || | | Sbjct 21265 ACGCCGACGTGTTCGAGTTCCTGGAGCTGCGTAAGAATCACGGTAACGA-GCTGCACCGC 21323 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || ||||| | || | |||||| ||| | || ||||| ||||||||| | || |||| | Sbjct 21324 GCGCGCGACTTGTTTTACGCTCTGTGGGTCCCCGATCTGTTCATGAAGCGCGTGGAGGCG 21383 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 | |||||| ||| || || || || || |||| || || |||| ||| ||| | ||| Sbjct 21384 AATGGCAAGTGGAGCCTGTTCTGCCCCAACGAGGCCCCCGGACTCTACGAGTGCTG-GGG 21442 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT 104871 || ||||| || | || ||| ||||||||| | || || || ||| |||| | Sbjct 21443 CGACGAGTTCGAGACGCTGTACGAGAAGTACGAGAAGGAGGGACGCGCGCGCAAGACGAT 21502 Query 104872 -----GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 ||||| || ||||| || || || | | || | ||||| || Sbjct 21503 CAACGCCCAGCAGC-----TGTGGTTCGCCATCCTGGACGCGCAGATTGAGACAGGCGTG 21557 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| ||||| |||| ||| || || |||| | || | Sbjct 21558 CCGTTCATGCTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGAACCTCGGCACG 21617 Query 104987 ATCAAGAGTTC---CAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 105043 ||| | || ||| | || || || |||| | || |||||| | Sbjct 21618 ATC---CGCTCAAGCAACTTGTGCTGCGAGATTATGGAGTACACGTCGCCCGATGAGGTG 21674 Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA 105103 || ||||| ||||| || || | || |||||||||| |||||| || || Sbjct 21675 GCGGTGTGCAACCTGGCGTCTGTGGCCCTCCCCAAGTTTGTGGA-----GGATGGAG-TG 21728 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 || | || | || || |||| || || || || ||| ||| | || | || Sbjct 21729 TTCAACTACCAGAAGCTGTACGAGGTGACCAAGGTGGTGACCCGGAACTTGAATAAGGTC 21788 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 |||||| || | |||||||| ||| || || || || || ||| | ||||| || Sbjct 21789 ATTGATGTCAACTACTACCCCGTCGAGGAGGCACGCAAGTCCAACATGCGCCACCGCCCG 21848 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGAT 105283 ||||| | ||||| |||||||||||||||| ||| || || | | || || || Sbjct 21849 GTTGGTATTGGTGTCCAGGGTCTCGCGGATGCATTTATCCTCATGAACTATGCGTTCGAG 21908 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 | |||| ||| |||| | ||| || ||||| || || |||| || | Sbjct 21909 AGCCCGCAAGCCCGTGAACTCAACATGAACATCTTCGAGACGATCTACTACGCTTCTATG 21968 Query 105344 GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 ||| || ||| | || ||| || || || || || || |||| || || Sbjct 21969 GAGACGTCGATGGAGATCGCCAAGGAGCTGGGCCCGTACGAGACGTTCCAGGGCTCGCCT 22028 Query 105404 GCTTCA-CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC----- 105455 || || |||||| ||| || || || |||||| || | |||| | |||| Sbjct 22029 GC--CAGCAAGGGTATCTTCCAGTTCGACATGTGG---GGCGTGACCCCGTCTTCCGGTT 22083 Query 105456 ACTACGACTGGGAAGCTCTCAAG--GAACG-CATCAAGGAGAAGGGTCTTCGTAACAGTC 105512 | |||||| || |||||| ||||| |||| || | || | || ||| | Sbjct 22084 TGTGGGACTGGACTGCGCTCAAGGAGAACGTGATCA---AGCACGGCATACGCAACTCGC 22140 Query 105513 TCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 105572 ||||| ||||||| ||||| || || || || || || || ||||| || || || | | Sbjct 22141 TCCTCGTGGCTCCGATGCCCACTGCGTCGACGGCTCAGATTTTGGGCAACAACGAGTCCA 22200 Query 105573 TTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTG 105632 | || || || ||| ||||||| || | | || || || ||||| ||| | Sbjct 22201 TCGAGCCGTATACGTCGAACATGTACAACCGCCGCGTGCTGGCTGGTGAGTTCACGATCG 22260 Query 105633 TCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG---A 105689 | |||||| | ||| || | || || | ||| | || ||||| | || || | Sbjct 22261 TGAACAAGTACCTCATGAAAGAGCTGATCGAGCTGGGAATCTGGACGCCTGAGGTGCGCA 22320 Query 105690 AGGATCTCATGG-TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGA---TATTCCAAAT 105745 | | || ||| ||| ||||| ||| | || || ||| | ||||| | Sbjct 22321 ACCAGATCCTGGCTGA----CGGTGGCTCCGTGCAGAA---GGTGAAATCCATTCCGGAC 22373 Query 105746 GAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATG 105805 | | ||| || |||| ||||| |||||||||||| ||||| || | ||| || Sbjct 22374 CAGGTCAAGGAGAAGTACAAGACAGTGTGGGAAATCAAGCAGAAGGCCGTGTTGGACCTG 22433 Query 105806 GCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGT 105865 | || || ||||| || |||| || || || |||| | ||| | Sbjct 22434 TCGGCGGACCGTGGCGCCTACATTTGCCAGAGCCAGTCGTTGAACATTCACATTGCCGAC 22493 Query 105866 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACG 105925 || ||||| ||| | | || |||||| | ||| ||||||||||| ||||| ||| Sbjct 22494 CCGACGATCAGTAAGTTGACGTCCATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACG 22553 Query 105926 GGGATGTATTAC 105937 || ||||| ||| Sbjct 22554 GGCATGTACTAC 22565 >seq2616 Length=17034 Score = 91.5 bits (100), Expect = 2e-13 Identities = 203/300 (68%), Gaps = 11/300 (4%) Strand=Plus/Plus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 ||||| || || || ||||| ||||| |||| || | ||||| ||||| |||| || Sbjct 3042 GATCTGCCGGTCGAATCGACCGGGACGCAGGATAGCCTTGTCAAGAATATCGGCGCGGTT 3101 Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA 9633 ||| | || | || || | ||| ||| | | |||||||||||||| || Sbjct 3102 CGTACCAGCAAGCACCACCACACCC---TCACTCGAGTTGAAACCATCCATCTCCACCAG 3158 Query 9634 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACT-GCGTT 9692 || ||||||| || | ||| || || || || || | || | | || || || | Sbjct 3159 CAGCTGGTTAAGCGTGTTTTCACGCTCGTCGTT-GCCGCCAGAGAAGTTGCCCTTGCTTC 3217 Query 9693 GCTTTC---CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG 9749 || | |||| |||||||| ||||| ||||| || |||||||| || |||||| Sbjct 3218 GCGCACGGGCCACAGCATCAATTTCATCGATGAACACAATGCATGGAGCGTTCGCGCGAG 3277 Query 9750 CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9809 | | | || ||||| ||||||||| | ||||||||||| ||||| || | |||| Sbjct 3278 CCTCCTTGAACAGATCACGTACACGCGACGGACCCACACCAACGAACATTTCGATGAAGT 3337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583194898820360