Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq7541 156 1e-32 seq7800 91.5 4e-13 >seq7541 Length=23478 Score = 156 bits (172), Expect = 1e-32 Identities = 519/791 (66%), Gaps = 15/791 (2%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || || ||||| | || || ||| || || || || || || | Sbjct 12355 CCCGAGGAGATCTCGTCCATGGTGCTGGTCAAGATGCGCGAGATCGCGGAGGCCTACATT 12296 Query 349592 GGTGAAACAG-TAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 ||| || ||| | | | || || | || || || ||||| || || || | ||||| Sbjct 12295 GGT-AAGCAGGTGAAGAACGCAGTGGTGACGGTGCCGGCCTACTTCAACGACTCACAGCG 12237 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 || || || || || || |||||| || | || || || | || || || || Sbjct 12236 GCAGGCGACCAAGGACGCCGGAGCCATTGCCGGCCTGAACGTGCTGCGTATTATCAACGA 12177 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTAT 349770 ||||| || || |||||||| || || || || || | | ||| ||| | || | Sbjct 12176 GCCCACGGCCGCTGCAATTGCGTACGGTCTGGACAAGAAGGGTGG---AGAGCACAACGT 12120 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830 | || || || | || || || || ||||| || || || || || |||||||||| Sbjct 12119 GTTGATCTTCGACCTGGGCGGAGGAACGTTTGACGTCTCCCTCCTCACTATTGAAGAGGG 12060 Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 || || || || || || || || || ||||| ||||| || || ||||| || || || Sbjct 12059 TATCTTCGAGGTGAAGGCGACGGCAGGCGATACGCATCTGGGCGGCGAAGACTTCGACAA 12000 Query 349891 TCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAG 349949 || | || | || || | ||||||||||| |||| | | |||| || || Sbjct 11999 CCGCTTGGTCGAGTTCTTCGTGCAGGAATTTAAGCG-CAAGTATCGCAAGGATA-TGAAG 11942 Query 349950 AT-AATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008 | || | | || ||||| || || | || |||||||| |||||||||||| | | Sbjct 11941 GTGAACTCGCGTGCTATGCGCCGTCTCCGTACGGCGTGTGAGCGTGCTAAGCGTACACTG 11882 Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCT-GATGGCAAAGATTTCTT 350067 || | || | || | | || || ||||| || ||||| ||||| |||||| Sbjct 11881 TCGACGTCTGCGCAGGCGTACATCGAGATTGACTC-GTTGCTGGATGGTGTCGATTTCAA 11823 Query 350068 TTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAAT 350127 || | ||||| ||||| |||||||| || | ||| || | ||| | || || Sbjct 11822 CTCGACCATTACGCGTGCACGGTTTGAGGATCTTTGTGGTGAATTCTTTCGCAAGACGAT 11763 Query 350128 GGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGT 350187 ||| || |||| | || || ||| | || ||||||| | || | | || || Sbjct 11762 GGACCCGGTGGCGCAGGTTCTACGAGACTCGAAGCTGTCCAAGAGACAAGTGAACGAGGT 11703 Query 350188 AGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACT-ATCTGAGTTTT 350246 || | || || || || || ||||| || || ||||| ||||| | ||| || |||| Sbjct 11702 GGTGCTGGTCGGGGGCTCGACGCGTATCCCCAAGGTTCAGCAGTTGTTGATC-GACTTTT 11644 Query 350247 TTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCT 350305 | || || || || | ||| || ||||| || || || |||||||| || || |||||| Sbjct 11643 TCAACGGTAAGGAGCTGTTCAAG-TCAATCAACCCGGACGAAGCTGTCGCCTACGGTGCT 11585 Query 350306 GCTGTTCAGGC 350316 | || ||||| Sbjct 11584 ACAGTGCAGGC 11574 Score = 102 bits (112), Expect = 2e-16 Identities = 646/1035 (62%), Gaps = 8/1035 (1%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || || || || ||||| || || || | |||||| || || || || || Sbjct 5353 GCCGTCATCACGGTGCCGGCCTACTTCAACGACTCGCAGCGTCAGGCCACCAAGGACGCC 5412 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || || || || ||||| || || || ||| Sbjct 5413 GGAGCCATTGCCGGCCTGAACGTGCTGCGCATCATCAACGAGCCCACGGCCGCCGCCATT 5472 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || || || || | | | | | || || | || || || || | || Sbjct 5473 GCCTACGGTCTGGACAAGAAGGGCGGC---GAGCGCAACGTGCTGATCTTCGACCTGGGC 5529 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 || ||||| || || || || || || | |||| ||||| || || || || || || Sbjct 5530 GGCGGTACCTTCGACGTGTCGCTGCTGTCCATTGAGGAGGGCATCTTCGAGGTGAAGGCC 5589 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 ||||||||||| || || || || || || || || || ||||| ||||| | || Sbjct 5590 ACTGCTGGTGACACGCACCTGGGCGGCGAGGACTTCGACAATCGCCTCGTCGAGTTCTTC 5649 Query 349910 GTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCG 349968 || | || || ||||| ||||| | || || | | || | | || |||| Sbjct 5650 GTGCAGGAGTTCAAGCG-CAAGCACCGCAAGGACATGACACAGAACCAACGCGCGCTGCG 5708 Query 349969 TCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTC 350028 || || | || ||||| || || || ||||| | | || || | |||| ||| Sbjct 5709 GCGTCTGCGTACGGCGTGCGAGCGCGCCAAGCGGACGCTGTCGTCGTCGGCCCAGGCCTA 5768 Query 350029 TATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088 ||||| || || || || || ||| || ||| || | || || || || || Sbjct 5769 CATTGAGATCGACTCGCTGTACGACGGCGTGGACTTCAACTCGACCATCACGCGCGCCCG 5828 Query 350089 GTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATT 350148 || || || | ||| || ||| | || ||||| || ||||| || || || Sbjct 5829 TTTCGAGGACCTGTGTGGCGACTACTTTCGCAAGACCATGGAGCCCGTGGAGAAGGTGTT 5888 Query 350149 AAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTAC 350208 || || || ||||||| | ||| | | || || || |||| || || || || Sbjct 5889 GCGCGACGCCAAGCTGTCCAAGAGCCAGGTGAACGAGGTGGTGCTAGTGGGCGGCTCGAC 5948 Query 350209 ACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAG 350268 ||||| || || || || || | || || ||||| || || ||||| || || | Sbjct 5949 GCGTATCCCCAAGGTGCAGCAACTGCTGTCCGAGTTCTTCAACGGCAAGGAGCCCAACAA 6008 Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328 || || || || ||||| || || || ||||| || | || ||||| | || | Sbjct 6009 GTCCATCAACCCTGATGAGGCCGTAGCGTATGGCGCAACGGTGCAGGCGGCCATCCTGGG 6068 Query 350329 TGGAAATAAGAGTTC---TAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTC 350385 || || | || || | | || || | || || ||||| || || || || Sbjct 6069 CGGCAACGACTCGTCGGACAAGCTGCAGGACCTGCTGCTGCTGGATGTGACCCCTCTGTC 6128 Query 350386 GCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGT 350445 || || || || || | || | || ||||| || || | | || | || || Sbjct 6129 TCTGGGTTTGGAGACGGCCGGCGGTGTCATGACGACGCTGATCGCGCGTAACACGACGGT 6188 Query 350446 ACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAAT 350505 || || || ||||| || || || || || | || || || ||||| | ||| || Sbjct 6189 GCCCACCAAGAAGTCGCAGACGTTCTCGACGTACGCGGACAACCAGCCTGGCGTACTCAT 6248 Query 350506 TCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTAC 350565 ||| || || || ||||| || | || || ||| || || || | || | Sbjct 6249 TCAGGTTTTCGAGGGTGAGCGGTCCATGACCCGTGACAATCATCTTCTGGGCAAGTTCAA 6308 Query 350566 CCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATAT 350625 ||| | || || || |||||| | || ||||| |||||||| || | |||||||| Sbjct 6309 CCTGGACGCCATCCCGCCCATGCCTCGTGGTGTTCCCCAGATTGATGTGACGTTCGATAT 6368 Query 350626 TGATTCAAATGGTAT 350640 ||| | || || || Sbjct 6369 CGATGCGAACGGGAT 6383 >seq7800 Length=20048 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 229 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 170 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 169 CCCTGCTTCTCCA 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515078915073317