Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq7165 176 4e-39 >seq7165 Length=36682 Score = 176 bits (194), Expect = 4e-39 Identities = 439/663 (66%), Gaps = 13/663 (2%) Strand=Plus/Minus Query 29876 AGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCC 29935 || || || |||| | ||| || || || ||||| || | ||| | ||| || || Sbjct 20064 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCACCGATAACGTGAATAAATTCACCA 20005 Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29995 |||| ||||| | || || |||| | |||||| | | |||||| || |||||| Sbjct 20004 GGTTTCAGCCCTGCCACTTGTGCCACTAGTCGCGTGAGCAACGCGTAGCTTGCAATGTTA 19945 Query 29996 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 30055 || || || || || ||||| || |||| | |||||| | ||||||||| | || ||| Sbjct 19944 AACGGCACACCAAGGCCCATATCGGCCGAGCGCTGGTACATCTGACACGACAATTCGCCG 19885 Query 30056 TCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 || |||||| ||||| || | ||| ||||| || || ||||| || || Sbjct 19884 TCCGCCACGTAGAACTGGCAGAACATGTGACACGGCGGCAGTGCCATCTCATTCAGATCA 19825 Query 30116 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT-GTTC----CTGATGA 30170 |||||||| || ||| | ||| || | ||| ||||| || | || |||| Sbjct 19824 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCATCGGGTTCGTACGCAGCTTATGA 19765 Query 30171 GGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCG 30230 ||| | | ||||| ||||| ||| || | ||| ||||| |||||||| Sbjct 19764 AT--CACCTCAGTA---AGCTGGTCCACTCCCTGTCCAGTGTAATCTGCGTGCATGTCCG 19710 Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 |||||| || || ||||| | ||||||||| ||||| |||||||| || || || ||| Sbjct 19709 TGTACTTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACCGGTCCGAGATCACCTACTT 19650 Query 30291 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30350 | | || || || | | |||| | | || | ||| || || |||||||||| | Sbjct 19649 CGCGCGTCTGCAATCCTCGGCTATCCAGATACTCCCGGGACCCATTCCCGTCCCAGATGT 19590 Query 30351 TTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCT 30410 | |||||| ||| | | | | ||| || |||| ||||||||||||| Sbjct 19589 GAATGTCCTTCTGCTGCAGCGTGTGCGCGCTCGTGTCGCCGCTGATAAACCACAGCAGCT 19530 Query 30411 CCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC---TGTCCCT 30467 ||||| | ||| | ||| || || | |||||||||||| || || ||| | | | Sbjct 19529 CCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTTTCTC 19470 Query 30468 TGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTCTC 30527 | || | | | || ||| | |||||||| ||||| || |||||||| | ||||| Sbjct 19469 TCAGACTGAAGCTCATCTGCGCTCCAAACACCGACAACGTGCCAGTGCCCGTGCGGTCTC 19410 Query 30528 CCC 30530 ||| Sbjct 19409 CCC 19407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406265639703588