Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq4443 120 1e-22 >seq4443 Length=35022 Score = 120 bits (132), Expect = 1e-22 Identities = 326/497 (66%), Gaps = 9/497 (2%) Strand=Plus/Minus Query 66620 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66679 |||| |||||| ||||||||| || | || | | ||||||||||| || ||||| ||| Sbjct 5551 GCCTTCATCGATGCTGAGCACGCCATTGATGCCCACTACGCCAAGGCTCTGGGTGTCGAC 5492 Query 66680 CTCGACAACCTCGTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGAC 66739 | ||| || || ||||| || | ||||| | || ||||| |||| ||| Sbjct 5491 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCGCTGGAAATCGCGGAC 5432 Query 66740 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTG 66799 ||| || ||||| | | || | |||| || | ||| |||||||| || ||| Sbjct 5431 ACGCTCATCCGATCTGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCGGCACTTGTG 5372 Query 66800 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 66859 || || |||||||| || || || || || ||| || | | ||||| ||||| || Sbjct 5371 CCACGTGCCGAGCTTGAGGGTGAAATGGGAGACCAGCAGATTGCGCTGCAGGCGCGACTG 5312 Query 66860 ATGTCACAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACG 66916 ||| || || ||||||||||||| || | | |||| |||| ||| | | Sbjct 5311 ATGAGCCAAGCTCTGCGCAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA-- 5254 Query 66917 CTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACC 66976 ||| | |||||| | ||| ||||| | |||| | || ||| | |||| | Sbjct 5253 -TCTTCCTGAACCAGATCCGCCAGAAGGTGGGCA---TTATCTTCGGATCTCCTGAGGTC 5198 Query 66977 ACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATC 67036 || |||| || | || ||| | | ||||| || || || | || | || |||| Sbjct 5197 ACGTCGGGTGGTACAGCGTTGCGTTATTACGCGTCTGTGCGCCTTGACATTCGCCGCAAG 5138 Query 67037 GCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAG 67096 | | |||||||| || || |||||||||| || |||||||| | |||| Sbjct 5137 ACGGCTATCAAGGAAGGTGACCAGATTGTCGGCAACGAAACGGTCGTGAAGGTGGCCAAG 5078 Query 67097 AACAAGCTGGCCCCGCC 67113 ||||||||||| |||| Sbjct 5077 AACAAGCTGGCATCGCC 5061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242834045771226