Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5367 104 2e-17 seq9025 96.9 3e-15 seq6965 96.9 3e-15 >seq5367 Length=20193 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || || | || || || |||| || ||||| ||||| || || || Sbjct 7867 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 7926 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 || ||||||||||| | || | || || |||||| ||||||||| |||| | | | | Sbjct 7927 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 7985 Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | | | ||| | ||||||||||| |||||| | ||||||||||| || || ||||| Sbjct 7986 AATGCTGTCGGATGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCACAAA 8045 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 8046 GATCTGCAT 8054 >seq9025 Length=46235 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| |||||||| ||| || || || || || ||| || || || |||| || Sbjct 13040 CACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 13099 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || || || ||||||||||| | || | || || ||||| Sbjct 13100 AAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 13159 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||||| || | | | | || || || ||||||||||| ||||| | || Sbjct 13160 AATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAAGTGATCGTCTT 13219 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||||| || || || ||||| |||||||| Sbjct 13220 GCCCGTCAAAGTCTTCACGAAGATCTGCATCTT 13252 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| |||||||| ||| || || || || || ||| || || || |||| || Sbjct 12812 CACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 12871 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || || || ||||||||||| | || | || || ||||| Sbjct 12872 AAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 12931 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||||| || | | | | || || || ||||||||||| ||||| | || Sbjct 12932 AATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAAGTGATCGTCTT 12991 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| || || || ||||| ||||| Sbjct 12992 GCCCGTCAAAGTCTTCACGAAGATCTGCAT 13021 >seq6965 Length=79392 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||| || || || | Sbjct 54374 GCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 54315 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || | |||||||||||| | || | || || || Sbjct 54314 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTT 54255 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 ||| ||||||||| || | ||| | | | || || | ||||||||||| ||||| Sbjct 54254 GTCTTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGA 54196 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || ||||||| ||| || |||||||| ||||| || Sbjct 54195 TCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATGTT 54156 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| || || || || || ||| || || || |||| || Sbjct 54596 CACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 54537 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || | |||||||||||| | || | || || ||||| Sbjct 54536 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 54477 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||||||| || | ||| | | | || || | ||||||||||| |||||| | | Sbjct 54476 GATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAGCGTGATCGTCT 54418 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| ||| || |||||||| ||||| Sbjct 54417 TCCCCGTCAACGTCTTCACAAAGATCTGCAT 54387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429498280048607