Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq7165 113 4e-20 seq7714 91.5 1e-13 >seq7165 Length=36682 Score = 113 bits (124), Expect = 4e-20 Identities = 423/666 (64%), Gaps = 19/666 (3%) Strand=Plus/Minus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 || || || ||||||| || || || || || || || | ||| | ||| || || Sbjct 20064 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCACCGATAACGTGAATAAATTCACCA 20005 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 |||| ||||| | || || |||| | |||||| | | |||||| || |||||| Sbjct 20004 GGTTTCAGCCCTGCCACTTGTGCCACTAGTCGCGTGAGCAACGCGTAGCTTGCAATGTTA 19945 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || ||||| || || ||||| || | || | |||||| | ||| ||||| | || ||| Sbjct 19944 AACGGCACACCAAGGCCCATATCGGCCGAGCGCTGGTACATCTGACACGACAATTCGCCG 19885 Query 29828 TCGCTCACGTAAAACTGACA---CATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG 29884 || |||||| ||||| || |||| || ||||| || || ||||| | || Sbjct 19884 TCCGCCACGTAGAACTGGCAGAACATG---TGACACGGCGGCAGTGCCATCTCATTCAGA 19828 Query 29885 TCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTT-GTTC----CTGA 29939 || |||||||| ||| ||| | ||| || | ||| ||||| || | || | Sbjct 19827 TCAGCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCATCGGGTTCGTACGCAGCTTA 19768 Query 29940 TGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNN 29999 ||| ||| | | ||||| ||||| ||| || | ||| |||| Sbjct 19767 TGAAT--CACCTCAGTA---AGCTGGTCCACTCCCTGTCCAGTGTAATCTGCGTGCATGT 19713 Query 30000 NNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCT 30059 | ||||| | ||||||||| ||||| |||||||| || || || Sbjct 19712 CCGTGTACTTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACCGGTCCGAGATCACCTA 19653 Query 30060 CTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGA 30119 |||| | || || || | | |||| | | || | ||| || || ||||||||| Sbjct 19652 CTTCGCGCGTCTGCAATCCTCGGCTATCCAGATACTCCCGGGACCCATTCCCGTCCCAGA 19593 Query 30120 TCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCA 30179 | | | |||||| ||| | | | | ||| || |||| |||||||||| Sbjct 19592 TGTGAATGTCCTTCTGCTGCAGCGTGTGCGCGCTCGTGTCGCCGCTGATAAACCACAGCA 19533 Query 30180 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC---TGTC 30236 |||||||| | ||| | ||| || || | |||||||||||| || || ||| | | Sbjct 19532 GCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTTT 19473 Query 30237 CCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCCTGT 30296 | | || | | | ||| ||| | ||||||| ||||| || ||||| || | || Sbjct 19472 CTCTCAGACTGAAGCTCATCTGCGCTCCAAACACCGACAACGTGCCAGTGCCCGTGCGGT 19413 Query 30297 CTCCCC 30302 |||||| Sbjct 19412 CTCCCC 19407 >seq7714 Length=68489 Score = 91.5 bits (100), Expect = 1e-13 Identities = 185/272 (68%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 49862 ACTCGTATCT-CTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCA 49920 ||||| |||| ||| || | ||||| || | | ||| |||| || |||| | ||| | Sbjct 16681 ACTCG-ATCTTCTCAAGGATCAGCTGCGCCACGCGGTCCCCCCGCTTGACCGGGAAGTCC 16623 Query 49921 TCACACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACC 49980 ||| | || ||| ||||| || ||||| | |||||| | |||||||| || | ||| Sbjct 16622 TCAGTCGCATGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCATCGATCACA 16563 Query 49981 CCGGCACCGACGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCG 50040 ||||| || ||| || ||||| || || || || ||||| | || ||||| | || Sbjct 16562 CCGGCGCCAGTGTCGATGAACTTCTTAAGTGCGAGTCCGGAGCGCGGCGCCACGCGCGCG 16503 Query 50041 TAGAGGCCCGGGGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAG 50100 || || | ||| | ||| | ||||||||||| || ||| | ||||| | Sbjct 16502 TAACATCCAGCGGGAACGGCCACCACCAGGTCCGTCTTGACGAGGCCTTTGCCGCCCGCA 16443 Query 50101 GGGACCACGACGGGGTGAGCGGCCGCCAGGTC 50132 || | ||| || || ||||||| |||||| Sbjct 16442 GGAATCACAGCGTCGTAGGCGGCCGACAGGTC 16411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406118455919554