Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq7165 161 7e-35 seq7714 84.2 2e-11 >seq7165 Length=36682 Score = 161 bits (178), Expect = 7e-35 Identities = 436/663 (66%), Gaps = 13/663 (2%) Strand=Plus/Minus Query 27142 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 27201 || || || ||||| | ||| || || || ||||| || | ||| | ||| || || Sbjct 20064 AGAGGCTCAACGTGGTTCAGATACACATGCGCGTCACCGATAACGTGAATAAATTCACCA 20005 Query 27202 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 27261 |||| ||||| | || || |||| | |||||| | | |||||| || |||||| Sbjct 20004 GGTTTCAGCCCTGCCACTTGTGCCACTAGTCGCGTGAGCAACGCGTAGCTTGCAATGTTA 19945 Query 27262 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA 27321 || || || || || ||||| || |||| | |||||| | ||||||||| | || || Sbjct 19944 AACGGCACACCAAGGCCCATATCGGCCGAGCGCTGGTACATCTGACACGACAATTCGCCG 19885 Query 27322 TCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 || ||||| ||||| || | ||| ||||| || || ||||| || || Sbjct 19884 TCCGCCACGTAGAACTGGCAGAACATGTGACACGGCGGCAGTGCCATCTCATTCAGATCA 19825 Query 27382 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT-GTTC----CTGATGA 27436 |||||||| || ||| | ||| || | ||| ||||| || | || |||| Sbjct 19824 GCAGGGTTCCACGCAGACAACACGATCCGGCGGTCCATCGGGTTCGTACGCAGCTTATGA 19765 Query 27437 GGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCG 27496 ||| | | ||||| ||||| ||| || | ||| ||| | |||||||| Sbjct 19764 AT--CACCTCAGTA---AGCTGGTCCACTCCCTGTCCAGTGTAATCTGCGTGCATGTCCG 19710 Query 27497 TGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 27556 |||||| || || ||||| | ||| ||||| ||||| |||||||| || || || ||| Sbjct 19709 TGTACTTGGCGCCAAAATGGCGCCACTGGAAGCCGTAGACCGGTCCGAGATCACCTACTT 19650 Query 27557 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616 | | || || || | | |||| | | || | ||| || || |||||||||| | Sbjct 19649 CGCGCGTCTGCAATCCTCGGCTATCCAGATACTCCCGGGACCCATTCCCGTCCCAGATGT 19590 Query 27617 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCT 27676 | |||||| ||| | | | | ||| || |||| ||||||||||||| Sbjct 19589 GAATGTCCTTCTGCTGCAGCGTGTGCGCGCTCGTGTCGCCGCTGATAAACCACAGCAGCT 19530 Query 27677 CCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC---TGTCCCT 27733 ||||| | ||| | ||| || || | |||||||||||| || || ||| | | | Sbjct 19529 CCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTTTCTC 19470 Query 27734 TGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTCTC 27793 | || | | | || ||| | |||||||| ||||| || |||||||| | ||||| Sbjct 19469 TCAGACTGAAGCTCATCTGCGCTCCAAACACCGACAACGTGCCAGTGCCCGTGCGGTCTC 19410 Query 27794 CCC 27796 ||| Sbjct 19409 CCC 19407 >seq7714 Length=68489 Score = 84.2 bits (92), Expect = 2e-11 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 44827 TCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTCG 44886 ||||||||| | || || ||||| | |||| || | ||||| || | | ||| Sbjct 16703 TCCACCTCCTGCACCTCCGGGTACTCGATCTTCTCAAGGATCAGCTGCGCCACGCGGTCC 16644 Query 44887 CCCCTCTTGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCC 44946 |||| ||||||| | ||| | | || ||| ||||| || ||||| | |||||| Sbjct 16643 CCCCGCTTGACCGGGAAGTCCTCAGTCGCATGGTTGAACAGGATCACGCCCACGTTGCCG 16584 Query 44947 CTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCCG 45006 | |||||||| || | ||| ||||| || ||| || || || || || || || ||| Sbjct 16583 CGGTAGTCGGCATCGATCACACCGGCGCCAGTGTCGATGAACTTCTTAAGTGCGAGTCCG 16524 Query 45007 GACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGACCAGGTCCGTCTTT 45066 || | || ||||| | |||| || | ||| | ||| |||||||||||||| Sbjct 16523 GAGCGCGGCGCCACGCGCGCGTAACATCCAGCGGGAACGGCCACCACCAGGTCCGTCTTG 16464 Query 45067 ACCAGGGCCCTGCC 45080 || ||| | |||| Sbjct 16463 ACGAGGCCTTTGCC 16450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369466494047609