Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000500205.2_202016-07- 21] 9,039 sequences; 52,448,581 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6965 152 4e-32 seq5367 140 2e-28 seq9025 129 4e-25 seq8636 100 2e-16 >seq6965 Length=79392 Score = 152 bits (168), Expect = 4e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || || |||||| ||||||||||| || Sbjct 54389 CATGCCACCACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTC 54330 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| ||||||||||| ||||| ||||||||||||||||| || | Sbjct 54329 GCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGG 54270 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| || || |||||||||| | | || | ||| | | || Sbjct 54269 AGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGAAGGCTC 54210 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| |||| ||| |||||||| ||||| | |||||||| ||||| |||||| Sbjct 54209 CACGTCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 54158 Score = 150 bits (166), Expect = 1e-31 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 44101 TTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||| || |||| || | || | || ||||||||| || || |||||| |||||||| Sbjct 54623 TTAGTTGTTTCCACCGCGAAGACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTT 54564 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| ||| || ||| |||| ||||||||||| ||||| ||||||||||||||||| Sbjct 54563 GTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTG 54504 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGC 44280 || | ||| | |||||||| || || |||||||||| | | || | ||| | Sbjct 54503 GTCAGGAGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGA 54444 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| |||| ||| |||||||| ||||| | |||||||| ||||| |||||| Sbjct 54443 AGGCTCCACGTCCAGCGTGATCGTCTTCCCCGTCAACGTCTTCACAAAGATCTGCATG 54386 >seq5367 Length=20193 Score = 140 bits (154), Expect = 2e-28 Identities = 149/195 (76%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| || | ||| ||| |||| || |||||||| || || |||| Sbjct 7865 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 7924 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| |||||||| || | || | |||||||| ||| || |||||||| || ||| Sbjct 7925 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 7984 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||| |||||| | ||||| |||| ||| || ||||||||||| ||||||||||| Sbjct 7985 --CAATGCTGTCGGATGGCTCCACGTCCAGCGTGATGGTCTTTCCCGTCAGGGTCTTCAC 8042 Query 44326 GAAGATTTGCATGAT 44340 ||||| |||||||| Sbjct 8043 AAAGATCTGCATGAT 8057 >seq9025 Length=46235 Score = 129 bits (142), Expect = 4e-25 Identities = 175/244 (72%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| ||||| |||||| ||||||||||| || Sbjct 13019 CATGCCACCGCGCAGACGCAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTC 13078 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| || |||||||| || || || |||| |||||||| || | Sbjct 13079 GCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGG 13138 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| || || |||||||||| | | || | ||| | | || Sbjct 13139 CGGGATGCCTTCCTTGTCTTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTC 13198 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAAT 44346 ||| |||| || |||||||| ||||| | |||||||||||||| ||||| || || Sbjct 13199 CACGTCCAAAGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATCTTGGGATC 13258 Query 44347 GAAA 44350 |||| Sbjct 13259 GAAA 13262 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||||||||| ||||| |||||| ||||||||||| ||| || ||| |||| Sbjct 12809 CAGCACCAGGTGTAGCGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTC 12868 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| || || || |||| |||||||| || | || | |||||||| || Sbjct 12869 CTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 12928 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 || |||||||||| | | || | ||| | | ||||| |||| || ||||| Sbjct 12929 TTGAATTTTCTGCTTCACATTGTCGATCGAGTCCGACGGCTCCACGTCCAAAGTGATCGT 12988 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| ||||| | |||||||||||||| |||||| Sbjct 12989 CTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 13022 >seq8636 Length=68535 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| |||||||| ||||| ||||||||||| || | Sbjct 28151 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTTTCCTTCTGGATGTTGTAGTCCGAA 28092 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || ||| |||| ||||||||||| ||||| ||||||| ||||||||| || Sbjct 28091 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 28039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359950742445063