Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq96 179 8e-40 seq1 138 2e-27 seq7045 134 3e-26 SEQ10534 100 6e-16 >seq96 Length=42084 Score = 179 bits (198), Expect = 8e-40 Identities = 681/1057 (64%), Gaps = 55/1057 (5%) Strand=Plus/Plus Query 318991 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 319050 || ||||| |||||||| ||||||| ||||| |||||||||| ||| |||||| Sbjct 20338 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCAAGG 20397 Query 319051 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 319110 ||| ||| |||||||||||||| ||||| |||||||| || | |||||| || ||| Sbjct 20398 TGAGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGCAGGGTGC 20457 Query 319111 TTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTT 319170 ||||| || |||| | || | |||| | ||||| |||| ||| || || || Sbjct 20458 TTCCACACCTGACCGCTAGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGAC 20517 Query 319171 TTCCCCGCACCGTTTTCGCCCACCACACCGATCCTG-------GAGTTCAGCGATACCTG 319223 || || |||||||| |||| ||| |||| | | ||| || || || | Sbjct 20518 TTACCGGCACCGTTGGGTCCCAGCACGGCGATACGGCTCGACAGAGCGCA-CGTCAC--G 20574 Query 319224 GGCATTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCG 319283 | || ||||| | | || | |||||| |||| | | | ||| || Sbjct 20575 GAGAT----GTTGTTGATCGACGGCTTGGGGGCACCCGGGTACTGGTA-CGAACAGTTCG 20629 Query 319284 T-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGA 319342 | || ||||||| |||| |||| | | ||||| || ||||| |||| Sbjct 20630 TCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCCGGGA 20689 Query 319343 ACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCT 319399 || | || | | ||| || |||| || ||||||| | | || || || Sbjct 20690 ACGTGAACTTCACGTTCTCCGACTCG---AGTTCGTAGTAGGCCTTGGCCTCAGGCTTCT 20746 Query 319400 TCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAAT 319459 || |||||||| ||| || || |||||||| |||||||||| || | ||||| | Sbjct 20747 GCTCCACGAACTTGGAGAGGTTACCCTTGTAGATCTTCAGCTTACGG---GTCTCGTAGT 20803 Query 319460 GGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACG 319519 | || || ||||| || | ||||||||| || |||||||| ||||| || | | | | Sbjct 20804 GAATGATGTTCGTGCAGACCGTGTCGAGGAAGCCAGAGTCGTGGGACACCATGATGGAGG 20863 Query 319520 AAACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AACCACCTCACGTTAGACACAGAAAG 319577 |||| | ||| || ||||||| ||| || | ||| ||||| ||| | Sbjct 20864 TCACGTTGGTCAGGCTGGTCAGGTAGTTC--TCGAGCCAGGCAACGTTCTTGACATCCAA 20921 Query 319578 ATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 319637 ||||| |||||||| ||||||||||| | | || ||| | ||||| ||||| || || Sbjct 20922 GTGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGCAGCATAGCACGGGCCAG 20981 Query 319638 AGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAA----TTGGG---GCAGATTGGC 319690 | | |||||| ||||| || || ||||| ||| || |||| ||| | ||| Sbjct 20982 CTCCAATTTCATCTTCCAACCACCCGAAAGCGTGCCAACGGCCTGGGCCTGCATCTCGGC 21041 Query 319691 GCTCAATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGT 319750 | | ||||| || | ||||| ||| || | || | | Sbjct 21042 GGT-------GAAGCCGACACCAGCAAGAGTGTCCTCGACCTCCTTGCGGGGC------G 21088 Query 319751 TTTCCTTTACTTGTTCATCATTGGCA---ATGAAGTCAATGATAGCCGTGTTAGAATCGG 319807 | ||| | | || |||| |||| |||||||| | | || | || || | Sbjct 21089 TCGACTTCA---GGTCGTCATCGGCAAGGATGAAGTCCACCACAGAGAGCTCAGCCTCCG 21145 Query 319808 ACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTT 319867 | | | || | ||| || ||| | |||| |||| | || |||||| || | Sbjct 21146 AAGCCTGCAGGTTGTGCTCAACGAACACAGTCTTCAGCTCGTCACGGCTGGGGAAGCCCT 21205 Query 319868 CAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCAC 319927 |||||||||||||| || |||||||| ||||| || ||||| ||||| || || | Sbjct 21206 CAAGCTGGCCGTTCGAGATGGCGCGCATGAGGGTCGACTTACCACAACCGTTGGGACCGC 21265 Query 319928 ACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTC 319987 |||||||||| |||| ||| || || ||| | || | |||||| || ||||| | | Sbjct 21266 ACAGACCGTAACGGTGTCCACGCTTGAGGCGAAGACGGGCGTTGTTGAGCAGAATCATAC 21325 Query 319988 CACCATATGCCAGAGAAAATTCACAATCACACAGATC 320024 |||| || || || || || || || | ||||| || Sbjct 21326 CACCGTAAGCAAGCGAGAACTCGCAGTTGCACAGGTC 21362 >seq1 Length=128069 Score = 138 bits (152), Expect = 2e-27 Identities = 575/893 (64%), Gaps = 36/893 (4%) Strand=Plus/Plus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 ||||| ||||| | | ||| ||||| | |||||||||||||| | |||| | |||||| Sbjct 110922 TTCCCCATCCAGGAGCACGACGTGTGGCAAATGTACAAGAAGGCCGAGGCATCCTTCTGG 110981 Query 229819 ACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATGA 229877 || | || || | ||| | ||| ||| || |||||| | || |||| || Sbjct 110982 ACGGCCGAAGAGCTCGATCT-AGTGCACGACCTCAAGGACTGGGGC---AACCTCACGGA 111037 Query 229878 CGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 229937 |||| || || |||||||| ||| | || | || || || | | ||| || || || Sbjct 111038 TAACGAGCGCCACTTCATCAAGCACGTGCTCGCCTTCTTTGCGGCCAGCGACGGCATCGT 111097 Query 229938 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 229997 | || || || | ||||| || ||||| ||| |||||||| ||| || Sbjct 111098 CAACGAGAACTTGGCAATGAACTTCAGCAACGAAGTGCAGGTACCAGAGGCGCGGTGCTT 111157 Query 229998 TTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTA 230053 |||| | ||| | |||| | ||| ||||| || || || | ||||||| Sbjct 111158 CTATGGCTTCCAGATCGCCATTGA--GAAC--ATCCACTCCGAGGTCTACTCGCTGCTTA 111213 Query 230054 TCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAAACA 230113 | ||| || || |||| | || | || | || | ||| ||||| | || Sbjct 111214 TTGACACGTACATCAAGGACGCGGTGGAGAAGGACCACCTGCTGCGTGCTATTGACACCA 111273 Query 230114 TCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAATC-- 230171 |||| || | || || ||| | ||||||| |||| || ||| || || Sbjct 111274 TCCCATGTGTCAAGAAGAAAGCACACTGGGCTCTCCGATGGTGCGACCCTCGTGTGTCCT 111333 Query 230172 -GTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTT 230230 || | | |||||||| |||||| | | || ||||| || | || || || | Sbjct 111334 CGTATCCGGAGCGTCTGCTCGCCTTCGCGGCGGTGGAAGGCATCTTCTTCTCGGGCTCCT 111393 Query 230231 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 230290 ||||| ||||||| ||||| ||| ||| | ||||| || ||| || | || |||| Sbjct 111394 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCAGTTTCTCGAACG 111453 Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGC 230350 || |||| || || |||||||| | || | || | | || ||||| || |||| Sbjct 111454 AGCTCATTAGCCGTGACGAGGGCATGCACACGGACTTTGCCTGCCTCATGTACTCGAAGC 111513 Query 230351 TCCAGAACAAGCTACCATTCGAGACG-GTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 || ||||||||| || ||| || || | | ||| | || || || | | | Sbjct 111514 TCGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATCGTGCGTGATGCTGTGGTGATC 111572 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-----CTTATTGGCATGAACGCTG 230464 || | ||||| |||| ||| |||| || || || || || |||||| | | Sbjct 111573 GAGCATGAGTT----TGTG-CGCGATTCGCTGCCGGTGGAGCTCATCGGTATGAACTCGG 111627 Query 230465 AACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGG---TT 230521 || ||| | |||||||| || ||||| || |||||| || | | || || || Sbjct 111628 GCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGCCTTCTCTACTCGCTGGGAGTTT 111687 Query 230522 ACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAG 230581 | ||| | |||||| | |||||||| || | | ||||| | || ||||| || | Sbjct 111688 CCAAGA---TCTACAACGCGAAGAACCCTTTCGACTGGATGGACATGATCTCGCTGCAGG 111744 Query 230582 GGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA-TCAGAGGCCTGGTGT 230633 | ||||||||||||||||| |||||||| | || || || ||| ||||||| Sbjct 111745 GCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTACTCCAAGG-CTGGTGT 111796 >seq7045 Length=3816 Score = 134 bits (148), Expect = 3e-26 Identities = 580/897 (65%), Gaps = 44/897 (5%) Strand=Plus/Minus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 ||||| || ||| | | |||| ||||| | ||||||||||| |||| || | |||||| Sbjct 3328 TTCCCGATTCAAGAACACGATGTGTGGCAGATGTACAAGAAAGCGGAAGCTTCGTTCTGG 3269 Query 229819 ACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATGA 229877 || | |||||| | ||| ||| ||| || || ||| |||||||||| || Sbjct 3268 ACAGCCGAGGAACTCGATCTCGT-GCACGACCTCAAAGATTGG---GAGAAACTCACGGA 3213 Query 229878 CGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 229937 | || || || |||||||||||| | || | |||||||| | | ||||| || || Sbjct 3212 TAATGAGCGCCACTTCATCAAACACGTGCTCGCATTTTTCGCTGCCAGTGATGGGATCGT 3153 Query 229938 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 229997 | ||||||||| | ||||| || ||||| ||| || || || || || Sbjct 3152 CAATGAAAATCTGGCCATGAACTTCAGCAACGAAGTGCAGGTGCCTGAAGCTCGATGCTT 3093 Query 229998 TTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTA 230053 || | || ||| | |||| | ||| ||||| || ||| || | ||||| | Sbjct 3092 CTACGGTTTCCAGATCGCCATTGA--GAAC--ATCCACTCCGAAGTCTACTCACTGCTCA 3037 Query 230054 TCGACGCGCTTAT------TTCCGACGAGCAAGAACGGAACGAGCTTTTTGATGCCATTG 230107 | ||| || ||| | | | ||| || ||| | || | |||||| | Sbjct 3036 TTGACACGTATATCAAGGATACTGTGGAGAAA------AACTATCTGCTGCGTGCCATCG 2983 Query 230108 AAAACAT-CCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGT 230166 | | || ||| ||| |||| || || || || ||||| ||||||| || || || Sbjct 2982 AGACAATTCCCTGCG-TTCAAAAGAAAGCGAACTGGGCATTGAAATGGTGCGACCCGCGT 2924 Query 230167 AAATCGTT-TGCC--GAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCC 230223 |||| | || ||||| | | || | | | || |||||||| | ||||| Sbjct 2923 GTGTCGTCCTACCCGGAGCGATTGCTGGCGTTTGCTTCAGTGGAAGGTATCTTCTTTTCG 2864 Query 230224 GGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTG 230283 ||| |||||| ||| || ||||| ||| ||| | |||||||| ||| | | Sbjct 2863 GGGTCGTTCTGCAGCATTTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGTCTCAGCTTC 2804 Query 230284 TCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTAT 230343 || || ||| | |||||||| ||||| ||| | || | | |||| | || ||||| Sbjct 2803 TCGAATGAGATGATCAGTCGTGACGAAGGTATGCACACAGACTTCGCCTGCCTCATGTAC 2744 Query 230344 TCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAA-ATCATTACAGAAGCAGT 230402 || || | ||||| |||||| || || | || | ||||| || || || Sbjct 2743 TCGAAATTGGTCAACAAACTACCAGAA-AGTCGTGTACACGAGATCATCCGCGATGCGGT 2685 Query 230403 TGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGAACG 230461 | | ||| | |||||| | || || || |||| ||| | || || ||||||||| Sbjct 2684 GGTGATTGAACACGAGTTCGTCTGCGAATCTCTTCC-TGTGGAGTTGATCGGCATGAACT 2626 Query 230462 CTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACT---TG 230518 | || ||| | |||||||| || || || || |||||| ||| || ||| || Sbjct 2625 CGACTCTAATGTGCCAGTACATTGAGTTTGTCGCTGACCGC----TTGCTGTACTCGCTG 2570 Query 230519 GTTACGAGAAAG-TGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTT 230577 | | | ||| | |||||| |||||||| || | | ||||| | || || | Sbjct 2569 GGTGTGTCCAAGATATACAACGTCAAGAACCCGTTCGACTGGATGGATATGATCTCATTG 2510 Query 230578 CAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA-TCAGAGGCCTGGTGT 230633 || || |||||||||||||| ||||||||||| | || || || ||| ||||||| Sbjct 2509 CAGGGAAAGACCAACTTCTTTGAAAAGCGTGTGGGGGAGTACTCCAAGG-CTGGTGT 2454 >SEQ10534 Length=2552 Score = 100 bits (110), Expect = 6e-16 Identities = 68/76 (89%), Gaps = 4/76 (5%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAAT----CTGGTGGTCGTGGGTTC 165765 ||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| Sbjct 1214 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGCTTGTGGTCGTGGGTTC 1273 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 1274 GAGCCCCACGGTGGGC 1289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057498190538570