Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 5e-13 >seq1 Length=128069 Score = 89.7 bits (98), Expect = 5e-13 Identities = 205/307 (67%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| || || || || ||| | |||||||| |||||||| ||||| ||||| Sbjct 111226 ATGTACGTGTCAATAAGCAGCGAGTAGACCTCGGAGTGGATGTTCTCAATGGCGATCTGG 111167 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTA 17351 || || || ||||| || || || | || || ||||| | ||| |||| || | Sbjct 111166 AAGCCATAGAAGCACCGCGCCTCTGGTACCTGCACTTCGTTGCTGAA--GTTCATTGCCA 111109 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 || ||||| |||||||||||||| || || || || || | | ||||| ||||| | Sbjct 111108 AGTTCTCGTTGACGATGCCGTCGCTGGCCGCAAAGAAGGCGAGCACGTGCTTGATGAAGT 111049 Query 17412 ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471 |||| || || || ||||||||| | || | || ||| | |||| Sbjct 111048 GGCGCTCGTTATCCGTGAGGTTGCCCCAGTCCTTGAGGTCGTGCACTAGATCGAGCTCTT 110989 Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTA 17531 ||| ||||| || ||| | ||||| || ||||| | ||| | || | | || | Sbjct 110988 CGGCCGTCCAGAAGGATGCCTCGGCCTTCTTGTACATTTGCCACACGTCGTGCTCCTGGA 110929 Query 17532 TGGGGAA 17538 ||||||| Sbjct 110928 TGGGGAA 110922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517390084016520