Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq7045 143 3e-29 seq1 100 3e-16 >seq7045 Length=3816 Score = 143 bits (158), Expect = 3e-29 Identities = 311/458 (68%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || || |||||||| || | |||||||| | ||||| | || || || | Sbjct 2746 ACATGAGGCAGGCGAAGTCTGTGTGCATACCTTCGTCACGACTGATCATCTCATTCGAGA 2805 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| ||||| ||||| | |||||| || || ||| || |||||| Sbjct 2806 AGCTGAGACCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAAAT-GCTGCAGAACGACCCC 2864 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CATC 16371 |||||||| ||||| || || || ||||| || | ||||| |||| ||| | | || Sbjct 2865 GAAAAGAAGATACCTTCCACTGAAGCAAACGCCAGCAATCGCTCCGGGTAGGACGACACA 2924 Query 16372 TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 || | ||||||| | |||| | ||||| | || | || || || || Sbjct 2925 CGCGGGTCGCA-CCATTTCAATGCCCAGTTCGCTTTCTTTTGAACGCAGGGAATTGTCTC 2983 Query 16432 TATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 ||||| | || | | ||| ||| | |||| | |||||||| ||||| || | Sbjct 2984 GATGGCACGCAGCAGATAGTTTTTCTCCACAGTATCCTTGATATACGTGTCAATGAGCAG 3043 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||| | ||| ||||| |||||||| ||||| ||||| || || |||||||||||||| Sbjct 3044 TGAGTAGACTTCGGAGTGGATGTTCTCAATGGCGATCTGGAAACCGTAGAAGCATCGAGC 3103 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTC--CGCCAGGTTCTCATTCACGATACCG 16609 || | | || ||||| | || |||| ||||| || ||||| ||||| || Sbjct 3104 TTCAGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGATTTTCATTGACGATCCCA 3161 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 ||||| ||||| ||||| || | | ||| || ||||| Sbjct 3162 TCACTGGCAGCGAAAAATGCGAGCACGTGTTTGATGAA 3199 >seq1 Length=128069 Score = 100 bits (110), Expect = 3e-16 Identities = 193/283 (68%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || ||||| ||||| || | ||| | || ||||| |||||||| ||||| ||||| Sbjct 111226 ATGTACGTGTCAATAAGCAGCGAGTAGACCTCGGAGTGGATGTTCTCAATGGCGATCTGG 111167 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTC--CGCCA 16589 || ||||||||||| || ||||| | || || ||||| | || |||| |||| Sbjct 111166 AAGCCATAGAAGCACCGCGCCTCTGGTACCTGCACTTCGTTGCTGAA--GTTCATTGCCA 111109 Query 16590 GGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAAT 16649 |||||| || ||||| ||||| || || ||||| || || | | |||||| ||||| | Sbjct 111108 AGTTCTCGTTGACGATGCCGTCGCTGGCCGCAAAGAAGGCGAGCACGTGCTTGATGAAGT 111049 Query 16650 ATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTT 16709 |||| | || || | ||| || || | || | || ||| | |||| Sbjct 111048 GGCGCTCGTTATCCGTGAGGTTGCCCCAGTCCTTGAGGTCGTGCACTAGATCGAGCTCTT 110989 Query 16710 CTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCA 16752 | | |||||| ||| ||| | ||||| || ||||||| ||| Sbjct 110988 CGGCCGTCCAGAAGGATGCCTCGGCCTTCTTGTACATTTGCCA 110946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511260726365480