Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq238 116 3e-21 seq321 113 4e-20 seq1885 86.0 5e-12 SEQ15627 82.4 6e-11 >seq238 Length=29854 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||||| ||||| ||||| || ||||| ||||| |||||| | ||||| Sbjct 21183 AGCACGAGGTGCAACGTGGATTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTCC 21242 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | || |||| ||||||||| ||| | |||||| ||||| Sbjct 21243 TCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCTTCTTTGTCC 21302 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || || | | ||| | ||| ||||| |||| || || ||| Sbjct 21303 TGAATCTTCTGCTTGACGTTGTCGATCGAATCTGAAGGCTCTACATCCAATGTGATCGTC 21362 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| ||||| ||||| || || ||||| Sbjct 21363 TTGCCGGTCAACGTCTTGACGAAGATCTGCAT 21394 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || || || | ||||||| |||| || |||||||| || ||||| ||||| Sbjct 20708 GTTTCCGCCGCGAAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTC 20767 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 ||| || || | ||||| ||||| || || ||| | || || | ||||||||| Sbjct 20768 GCTCAGCGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGG 20827 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | |||||||||||| || || || || || | | ||| | || ||||| Sbjct 20828 AGGGATGCCTTCCTTGTCCTGAATTTTCTGCTTAACATTGTCGATTGAGTCCGACGGCTC 20887 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | |||| || || ||||||||||| || || || ||||| || ||||| Sbjct 20888 CACGTCCAGAGTGATCGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 20938 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| |||| || |||||||| |||||||| ||||| | Sbjct 20940 CCACCACGCAGACGCAGAACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCACTC 20999 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||| || || ||||| || | || |||| ||||||||| ||| Sbjct 21000 AGAGTGCGACCGTCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCAGGGGGG 21059 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||||| || || | | ||| | || || ||| Sbjct 21060 ATGCCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGTTCCACG 21119 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| || || || || | || ||||| || || ||||| Sbjct 21120 TCGAGGGTAATAGTTTTACCCGTAAGAGTCTTGACGAAAATCTGCAT 21166 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| || |||||||| || ||||| || || | Sbjct 21396 CCACCACGCAGACGAAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTC 21455 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| ||||| || | ||||| | |||||| || ||| Sbjct 21456 AGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 21515 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| || || || || || | | ||| | ||| |||||| Sbjct 21516 ATTCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAATCCGACGGCTCCACG 21575 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | || || ||||||||||| | || || ||||| || ||||| || Sbjct 21576 TCGAGCGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTT 21625 >seq321 Length=26016 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||| |||||||| |||||||| ||||| ||| || | | ||| Sbjct 9867 AGCACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCC 9808 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| ||| | || |||| || ||||| || | |||||||||||| Sbjct 9807 TCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCC 9748 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || ||||| | | | | | || |||||| |||| || |||||| Sbjct 9747 TGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTC 9688 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| ||||| || ||||| || ||||| Sbjct 9687 TTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9656 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || |||||||| |||||||| ||||| ||| || | | ||| Sbjct 9639 AGCACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGTCCATCC 9580 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| ||| | || |||| || ||||| || | |||||||||||| Sbjct 9579 TCTAGCTGCTTGCCAGCAAAGATGAGTCGTTGTTGGTCAGGAGGGATGCCTTCCTTGTCC 9520 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || ||||| | | | | | || |||||| |||| || |||||| Sbjct 9519 TGAATCTTCTGCTTCACGTTGTCAATTGAGTCCGACGGCTCCACATCCAACGTGATGGTC 9460 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| ||||| || ||||| || ||||| Sbjct 9459 TTGCCGGTCAACGTCTTCACAAAGATCTGCAT 9428 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||| | ||||| || |||||||| || ||||| ||||| | Sbjct 9426 CCACCACGCAGACGAAGCACAAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGCTC 9367 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| ||||| ||||| || | || || | ||||||||| ||| Sbjct 9366 AGAGTACGTCCATCCTCTAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCAGGGGGA 9307 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| || ||||| ||||| | | ||| | || |||||| Sbjct 9306 ATTCCTTCCTTGTCCTGAATTTTTTGCTTCACGTTGTCGATGGAGTCCGACGGCTCCACG 9247 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || |||||||||||||| || || || || || || ||||| ||| Sbjct 9246 TCGAGTGTGATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCATCTTG 9196 >seq1885 Length=10629 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||||| || || || ||||||| ||||| ||||| || | | Sbjct 6245 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6186 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | || | ||||||||| || | |||||||||||| ||| || || || || | | Sbjct 6185 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGT 6126 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 | | | || |||||| |||| || ||||||||||| || | || || |||| Sbjct 6125 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 6066 Query 21166 ATATTTGCAT 21175 | || ||||| Sbjct 6065 AGATCTGCAT 6056 >SEQ15627 Length=1670 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || |||||||| |||||||| ||||| |||||| | |||| Sbjct 1388 AGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTGCGACCGTCT 1447 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| ||| | || || | | | ||||| | | ||||||||||| Sbjct 1448 TCGAGCTGCTTGCCAGCAAAGATGAGACGCCGTTGGTCAGGTTGAATTCCTTCCTTGTCC 1507 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 || || || || || | | ||| | || |||||| || | || || ||| Sbjct 1508 TGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATTGTC 1567 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||||||| | || || ||||| |||||||| || Sbjct 1568 TTGCCGGTGAGGGTCTTCACAAAAATTTGCATCTT 1602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422135488478924